Parental gene:

TKTL1, ENSPPYG00000020870

Aliases:None
Description:transketolase-like 1 [Source:HGNC Symbol;Acc:11835]
Organism:Orangutan (Pongo abelii)
Coordinates:X:154430898..154465345(+)


>ENSPPYG00000020870
ATGGCGGATGCTGAGGCGAGCGCTGAGTTGCCGGAGGAGGCCAGACCCGACAGGGGCACCTTGCAGGTGCTGCGAGATAT
GGCCGGCCGCTTGCGAATCCATTCCATCAGAGCCACATGCTCCACGAGCTCCGGCCATCCTACATCTTGTAGCAGTTCTG
CTGAGATCATGTCTGTGCTGTTCTTCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCGGGCAATGACCGATTT
GTCCTCGCAAAGAGACTGTCGTTTGTTGATGTGGCAACAGGATGGCTTGGACAAGGACTGGGAGTTGCATGTGGAATGGC
ATATACTGGCAAGTACTTCGACAGGGCCAGCTACCGGGTGTTCTGCCTCATGAGTGACGGCGAGTCCTCAGAAGGCTCTG
TCTGGGAGGCAATGGCCTTTGCTTCCTACCACAGTCTGGACAATCTTGTGGCAATCTTTGATGTGAACCGCCTGGGACAC
AGTGGTGCATTGCCTGCCGAGCACTGCATAGAGATCTATCAGAGGCGCTGCGAAGCCTTCGGGTGGAACACTTATGTGGT
GGATGGCCGGGACGTGGAGGCACTGTGCCAGGTGTTCTGGCAGGCTTCTCAGGTGAAGCACAAGCCCACTGCTGTGGTGG
CCAAGACCTTCAAGGGCCGGGGCACCCCAAGTATTGAGGATGCAGAAAGTTGGCATGGAAAGCCAATGCCGAGAGAAAGA
GCAGATGCCATTATCAAATTAATTGAGAGCCAGATACAGACCAGCAGGAATCTTGACCCACAGCTCCCCATTGAGGACTC
ACCTGAAGTCAACATCACAGATGTAAGGATGACCTCTCCACCTGATTACAGAGTTGGTGACAAGATAGCTACTCGGAAAG
CATGTGGCTTGGCTCTGGCTAAGCTGGGCTACGTGAACAACAGAGTTGTTGTGCTGGATGGTGACACCAAGCACTCTACC
TTCTCTGAGATATTCAACAAGGAGTACCCTGAGCGCTTCATCGAGTGCTTTATGGCTGAGCAAAACATGGTGAGCGTGGC
ACTGGGCTGTGCCTCCCGTGGACGGACCATTGCTTTTGCTAGCACCTTTGCTGCCTTTCTGACTCGAGCATTTGATCACA
TCCGGATAGGAGGCCTCTCTGAGAGCAACATCAACATTATTGGTTCCCACTGTGGGGTATCTGTTGGTGAAGATGGTGCT
TCCCAGATGGCCCTGGAGGATATAGCCATGTTCCGAACCATTCCCAAGTGCACGATCTTCTACCCAACTGATGCCGTCTC
CACGGAGAATGCTGTTGCTCTGGCGGCCAATGCCAAGGGGATGTGCTTCATTCGGACCACCCGACCAGAAACTATGGTTA
TTTACACCCCACAGGAACGCTTTGAGATCGGACAGGCCAAGGTCCTCCGCCACTGTGTCAGTGACAAGGTCACAGTTATT
GGAGCTGGAATTACTGTGTATGAAGCCTTAGCAGCTGCTGATGAGCTTTTGAAACAAGATATTTTTATCCGTGTCATCGA
CCTGTTTACCATTAAACCTCTGGATGTCGCCACCATCATCTCCAGTGCAAAAGCCACAGAGGGCCGGATCGTTACAGAGG
ATCACTACCCGCAAGGTGGCATCGGGGAAGCTGTCTGTGCAGCCGTCTCCATGGATCCTGACATTCAGGTTCATTCGCTG
GCAGTGTCGGGAGTGCCCCAGAGTGGGAAGTCTGAGGAATTGCTGGATATGTATGGAATTAGTGCCAGACATATCATAGT
GGCCGTGAAATGCATGTTGCTGAAC

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .12 RPM
SRP007412_kidney 0 .10 RPM
SRP007412_liver 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018441 ortholog_one2one 1 retrogene
retro_amel_119,
Equus caballus ENSECAG00000021992 ortholog_one2one 1 retrogene
retro_ecab_6,
Felis catus ENSFCAG00000011392 ortholog_one2one 1 retrogene
retro_fcat_84,
Loxodonta africana ENSLAFG00000005145 ortholog_one2one 1 retrogene
retro_lafr_6,
Ictidomys tridecemlineatus ENSSTOG00000005014 ortholog_one2one 1 retrogene
retro_itri_30,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_205 76.76 85.88
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Download FASTA sequences of all ENSPPYG00000020870 retrocopies