>retro_itri_30
ATGGCCATGGCCAACGACGCCAAGCCCGACGCCGAGACGCTGCAGGTGCTGCAGGACATGGCCCACCGCCTGCGAATCCA
CTCCATCAGGGCCACGTGTGCCTGCAGCTCCGGGCACCCCACGTCGTGCTGCAGTGCCGCGGAGATCATGTCGGTGCTCT
TCTTCTACGCCATGAGGTACAAAGGGACCGAGCCGGAGCACCGCGACAACGACCGGTTTGTCCTCTCCAAGGGCCACGCG
GCTCCAATCCTCTACGCCGCTTGGGCCGAGATAGGCGACATCCGCGAATCCGACTTGCTGAGCTTGAGGAAAATCCACTG
CGACTTGGAGGGCCACCCCACGCCTCGACTCTCGTTTGTGGACGTGGCAACAGGGTCCCTGGGGCAAGGACTAGGCGCTG
CCTGTGGAATGGCGTACACGGGCAAGTACTTCGACAAGGCCAGCTACCGGGTGTTCTGCCTCATGGGAGATGGCGAATCC
TCAGAAGGCTCTGTCTGGGAGGCTTTGGCTTTTGCTTCCCACTACAGTTTGGACAATCTCGTGGCAGTCTTCGACGTGAA
CCGCTTGGGACAAAGTGGCACTGCCCCCCTGGAGCACTGCACAGACATCTATCAGAGTCGCTGCGAAGCCTTTGGATGGA
ATACCTACCTAGTGGATGGTCATGATGTGGAGGCCTTGTGCCACGCATTTTGGCAAGCAGCTCAAGTGAAGAACAGACCT
ACTGCTGTCATCGCCAAGACCTTCAAGGGTCGAGGTATTCCAAACATTGAGGATGCAGAAAATTGGCATGGAAAGCCAAT
GCCCAAAGAGAGAGCAGATGCAATTATCCAGTTAATTGAGAGTCAGATACAGACCAACAGGAATCTCATGCCCCAGCCCC
CTGTGGAAGACTCACCTCCGATCAGCATCACTAATATAAAAATGACCTCTCCGCCTTCTTACAAAGCTGGTGACAAGATA
GCTACTCGGAAAGCATGTGGTCTGGCTCTGGCTAAGCTAGGCCATGCACATGAAAGAGTTATTGTTCTGGATGGTGACAC
AAAGAACTCCACCTTTTCTGAGATATTCAAGAAAGAACACCCTGAGCGTTTCATAGAGTGTTTTATTGCTGAGCAAAACA
TGGTTAGTGTGGCACTGGGCTGTGCCACACGTGGTCGTACCATTGCCTTTGCTAGTACCTTTGCTGCCTTTTTGACCCGA
GCATTTGATCAGATCCGAATGGGAGCCATCTCCCAAACTGATATCAACCTCATTGGTTCTCACTGTGGAGTATCCGTCGG
TGAAGATGGACCATCTCAGATGGCCCTAGAAGACCTAGCCATGTTTCGGAGTATTCCCAATTGCACCATTTTCTATCCAA
GTGATGCTATATCAACAGAGCATGCTGTTTATCTGGCTGCCAATACCAAGGGCATGTGCTTCATTAGAACCACCCGACCA
GAAACTGCAATCATTTATACTGCACAAGAAAATTTTGAGATTGGACAGGCCAAGGTAGTCCGCCACAGTGTTAATGACAA
GGTTACAGTTATTGGAGCTGGAGTTACTCTACACGAAGCCTTAGCAGCTGCTGATGATCTTTCTCAACAAGGTATTTCTA
TCCGTGTCATTGACCCATTTACTATTAAACCCCTGGATACAGCCACTATTATTTCCAGTGCAAAAGCCACAGGTGGCCGG
GTTATCACAGTAGAAGATCACTACAGAGAAGGTGGTATTGGAGAAGCAGTCTGTGCAGCTGTCTCCAGGGAGCCTGGCAT
CCTTGTTCATCAGCTGGCAGTGACAGAAGTGCCTCGAAGTGGGAAACCCAGTGAATTGCTGGACATGTTTGGAATCAGTG
CCAAACAAATCATAGAGGCTGTGAAATATACTTTAATGAGCTAA
ORF - retro_itri_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.2 % |
Parental protein coverage: |
83.57 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LLGSLGPRLSFVDVATGWLGQGLGAACGMAYTGKYFDQASYRVFCLLGDGESSEGSVWEALAFASYYSLD |
| L.G...PRLSFVDVATG.LGQGLGAACGMAYTGKYFD.ASYRVFCL.GDGESSEGSVWEALAFAS.YSLD |
Retrocopy | LEGHPTPRLSFVDVATGSLGQGLGAACGMAYTGKYFDKASYRVFCLMGDGESSEGSVWEALAFASHYSLD |
|
Parental | NLVVIFDVNRLGHGGTLPLEHCIEVYQKRCEAFGWNTYVVDGRDVEALCQVFWQAAQVKSKPTAVVAKTF |
| NLV..FDVNRLG..GT.PLEHC...YQ.RCEAFGWNTY.VDG.DVEALC..FWQAAQVK..PTAV.AKTF |
Retrocopy | NLVAVFDVNRLGQSGTAPLEHCTDIYQSRCEAFGWNTYLVDGHDVEALCHAFWQAAQVKNRPTAVIAKTF |
|
Parental | KGRGMPNVEDAENWYGKPMPKERADAIIKLIESQIQTNRSLLPQPPIEDSPQVNIMDIKMTCPPAYEVGD |
| KGRG.PN.EDAENW.GKPMPKERADAII.LIESQIQTNR.L.PQPP.EDSP...I..IKMT.PP.Y..GD |
Retrocopy | KGRGIPNIEDAENWHGKPMPKERADAIIQLIESQIQTNRNLMPQPPVEDSPPISITNIKMTSPPSYKAGD |
|
Parental | VVATRKACGLALAKLGHANNRVIVLDGDTKNSTFSEIFKKEHPERFIECFIAEQNMVSVALGCATRGRTI |
| ..ATRKACGLALAKLGHA..RVIVLDGDTKNSTFSEIFKKEHPERFIECFIAEQNMVSVALGCATRGRTI |
Retrocopy | KIATRKACGLALAKLGHAHERVIVLDGDTKNSTFSEIFKKEHPERFIECFIAEQNMVSVALGCATRGRTI |
|
Parental | AFASTFAAFLTRAFDQIRMGAIAQININLIGSHCGVSVGEDGPSQMALEDLAMFRAVPNCTIFYPSDAVS |
| AFASTFAAFLTRAFDQIRMGAI.Q..INLIGSHCGVSVGEDGPSQMALEDLAMFR..PNCTIFYPSDA.S |
Retrocopy | AFASTFAAFLTRAFDQIRMGAISQTDINLIGSHCGVSVGEDGPSQMALEDLAMFRSIPNCTIFYPSDAIS |
|
Parental | TEHAIYLAANTKGMCFIRTSRPETAVLYTPQETFKIGQAKVVRQSVNDKVTVIGAGITLHEALVAADDLS |
| TEHA.YLAANTKGMCFIRT.RPETA..YT.QE.F.IGQAKVVR.SVNDKVTVIGAG.TLHEAL.AADDLS |
Retrocopy | TEHAVYLAANTKGMCFIRTTRPETAIIYTAQENFEIGQAKVVRHSVNDKVTVIGAGVTLHEALAAADDLS |
|
Parental | KQDIFIRVIDLFTIKPLDVATIISNARATGGRIITVEDHYPEGGIGEAVSAAVSMEPDILVHQLAVMGVP |
| .Q.I.IRVID.FTIKPLD.ATIIS.A.ATGGR.ITVEDHY.EGGIGEAV.AAVS.EP.ILVHQLAV..VP |
Retrocopy | QQGISIRVIDPFTIKPLDTATIISSAKATGGRVITVEDHYREGGIGEAVCAAVSREPGILVHQLAVTEVP |
|
Parental | RSGRPSELLDTFGISARHIIVAVKCMLMN |
| RSG.PSELLD.FGISA..II.AVK..LM. |
Retrocopy | RSGKPSELLDMFGISAKQIIEAVKYTLMS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_30 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_30 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.