Parental gene:

Pcbp3, ENSRNOG00000001245

Aliases:None
Description:poly(rC)-binding protein 3 [Source:RefSeq peptide;Acc:NP_001011945]
Organism:Rat (Rattus norvegicus)
Coordinates:20:14590226..14789565(+)


>ENSRNOG00000001245
ATGGAATCTAAGGTCTCGGAAGGTGGCCTGAACGTAACCCTGACCATCCGCCTCCTGATGCATGGAAAGGAAGTTGGAAG
CATCATCGGGAAGAAAGGAGAAACAGTAAAGAAGATGCGTGAAGAGAGTGGCGCCAGGATCAACATCTCAGAGGGAAACT
GCCCAGAGAGAATCGTCACCATCACAGGCCCAACGGACGCCATCTTCAAGGCCTTTGCTATGATTGCATACAAGTTTGAG
GAGGACATCATTAATTCCATGAGCAACAGCCCTGCCACCAGCAAGCCCCCCGTGACACTGCGACTAGTGGTCCCTGCCAG
CCAGTGTGGGTCCCTGATCGGCAAAGGTGGCTCCAAGATCAAGGAGATCCGGGAGTCCACAGGTGCTCAGGTCCAGGTGG
CAGGTGACATGCTGCCCAACTCCACGGAGCGGGCGGTGACTATCTCAGGGACCCCGGACGCCATCATCCAGTGTGTGAAA
CAGATCTGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCTGT
CATTTTTGCAGGTGGTCAGGCCTACACAATCCAGGGACAGTACGCCATCCCCCACCCAGATCAGTTGACCAAGCTCCACC
AGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCTCGGACAGACCAACCCCGCTTTCCCCGGTCTGGATGCCAGCCCACCG
GCCAGCACTCATGAACTCACCATTCCCAATGATCTTATAGGCTGCATAATTGGACGCCAAGGCACCAAAATCAATGAAAT
CCGACAGATGTCTGGAGCTCAGATCAAAATCGCCAACGCCACTGAAGGGTCATCAGAGCGCCAGATTACCATCACAGGGA
CCCCAGCCAACATCAGCCTCGCCCAGTATCTCATCAACGCTAGGCTGACGTCTGAGGTCACTGGGATGGGTGCGCTCTAA

Library Parental gene expression (RPM)
SRP017611_liver 2 .29 RPM
SRP017611_kidney 6 .56 RPM
SRP017611_brain 37 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000003648 ortholog_one2one 1 retrogene
retro_cpor_257,
Dipodomys ordii ENSDORG00000003640 ortholog_one2one 2 retrogenes
retro_dord_742, retro_dord_748,
Myotis lucifugus ENSMLUG00000003074 ortholog_one2one 1 retrogene
retro_mluc_574,
Nomascus leucogenys ENSNLEG00000002639 ortholog_one2one 1 retrogene
retro_nleu_2044,
Oryctolagus cuniculus ENSOCUG00000002696 ortholog_one2one 1 retrogene
retro_ocun_1257,
Rattus norvegicus ENSRNOG00000036852 within_species_paralog 2 retrogenes
retro_rnor_1238, retro_rnor_2088,
Sorex araneus ENSSARG00000007629 ortholog_one2one 1 retrogene
retro_sara_414,
Tursiops truncatus ENSTTRG00000015075 ortholog_one2one 1 retrogene
retro_ttru_1095,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2656 79.58 75.24
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Download FASTA sequences of all ENSRNOG00000001245 retrocopies