RetrogeneDB ID: | retro_sara_414 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_196340:6470..6881(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000013200 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP3 | ||
Ensembl ID: | ENSSARG00000007629 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 3 [Source:HGNC Symbol;Acc:8651] |
Percent Identity: | 75.18 % |
Parental protein coverage: | 67.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEXXXXXXXXXXXTSKPPVTLR |
KGE.VK..REESGARINISEGNCPERI.T.TGPT.AIFKAFAMI..K.EE............S.PPVTLR | |
Retrocopy | KGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLR |
Parental | LVVPASQCGS-IGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLE |
LVVPA.QCGS.IGKGG.KIKEIRESTGAQVQVAGDMLPNSTERA.TI.G.P.....CVKQIC.VMLE | |
Retrocopy | LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003648 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003640 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003074 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002639 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002696 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001245 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007629 | 1 retrocopy |
retro_sara_414 ,
|
Tursiops truncatus | ENSTTRG00000015075 | 1 retrocopy |