RetrogeneDB ID: | retro_dord_742 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_70307:3669..4412(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDORG00000008216 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pcbp3 | ||
Ensembl ID: | ENSDORG00000003640 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 3 [Source:MGI Symbol;Acc:MGI:1890470] |
Percent Identity: | 69.2 % |
Parental protein coverage: | 67.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MESKVSEGGLNVTLTIRLL-MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIF |
M...V.E.GL....TIRLL.MHGKEVGSIIGKKGE.VK..REESGARINISEGNCPERI.T.TGPT.AIF | |
Retrocopy | MDAGVTESGLM*LSTIRLL<MHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIF |
Parental | KAFAMIAYKFEEDIINSMSNSLATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP |
KAFAMI..K.EEDI..SM.NS.A.S.PPVTLRLVVPA.QCGSLIGKGG.KIKEIRESTGAQVQVAGDMLP | |
Retrocopy | KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP |
Parental | NSTERAVTISGTPDAIIQCVKQICVVMLES---PPKG--ATIPYRPKPASTPVIFAGGQVRADPLAASTA |
NSTERA.TI.G.P.....CVKQIC.VMLE.....P.G...TIPY.P.PAS.PVI.AGGQ.R....AA... | |
Retrocopy | NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSD-AAGYP |
Parental | NLSLLLQHPPLPAYTIQGQYAIPHPDLTKLHQLAMQQTPF |
.....L..PPL.AY.IQGQ..I...DL.KL.Q.A.QQ..F | |
Retrocopy | HATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003648 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003640 | 2 retrocopies |
retro_dord_742 , retro_dord_748,
|
Dipodomys ordii | ENSDORG00000016024 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003074 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002639 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002696 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001245 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007629 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015075 | 1 retrocopy |