Parental gene: | Apex1, ENSRNOG00000009663 |
| Aliases: | Apex1, APE, Apex, REF-1 |
| Description: | DNA-(apurinic or apyrimidinic site) lyase DNA-(apurinic or apyrimidinic site) lyase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P43138] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 15:31682395..31684507(+) |
>ENSRNOG00000009663
ATGCCGAAGCGGGGGAAGAGAGCGGCAGCGGAAGACGGGGAAGAACCCAAGTCCGAGCCAGAGACCAAGAAGAGTAAGGG
GGCAGCAAAGAAAACTGAGAAGGAGGCCGCAGGAGAGGGCCCTGTCCTGTATGAGGACCCTCCAGATCAGAAAACGTCAG
CCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCTGGATTAAAAAGAAAGGCTTG
GATTGGGTAAAGGAAGAAGCACCAGACATCTTGTGCCTCCAAGAGACCAAATGCTCAGAGAACAAACTCCCGGCTGAACT
GCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCATCAGACAAAGAAGGATATAGTGGTGTGGGCCTACTTT
CCCGCCAATGCCCGCTCAAAGTCTCTTATGGCATTGGTGAGGAAGAACATGATCAAGAAGGCCGGGTGATTGTGGCTGAA
TTTGAGTCCTTTATCTTGGTAACAGCCTATGTTCCGAACGCAGGAAGGGGTCTGGTAAGACTGGAGTACCGACAGCGATG
GGATGAAGCCTTCAGAAAGTTTCTAAAGGACTTGGCTTCCCGGAAACCTCTTGTGCTGTGTGGGGATCTCAATGTGGCTC
ATGAAGAAATAGACCTTCGTAACCCCAAAGGAAACAAAAAGAATGCTGGTTTTACTCCCCAGGAGCGCCAAGGCTTTGGG
GAAATGCTACAGGCTGTACCACTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCCTACGCTTATACTTTCTGGAC
TTACATGATGAATGCCCGCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTGTCTCACTCTCTTTTACCTGCTT
TGTGCGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCTTTACCTAGCACTGTGA
ATGCCGAAGCGGGGGAAGAGAGCGGCAGCGGAAGACGGGGAAGAACCCAAGTCCGAGCCAGAGACCAAGAAGAGTAAGGG
GGCAGCAAAGAAAACTGAGAAGGAGGCCGCAGGAGAGGGCCCTGTCCTGTATGAGGACCCTCCAGATCAGAAAACGTCAG
CCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCTGGATTAAAAAGAAAGGCTTG
GATTGGGTAAAGGAAGAAGCACCAGACATCTTGTGCCTCCAAGAGACCAAATGCTCAGAGAACAAACTCCCGGCTGAACT
GCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCATCAGACAAAGAAGGATATAGTGGTGTGGGCCTACTTT
CCCGCCAATGCCCGCTCAAAGTCTCTTATGGCATTGGTGAGGAAGAACATGATCAAGAAGGCCGGGTGATTGTGGCTGAA
TTTGAGTCCTTTATCTTGGTAACAGCCTATGTTCCGAACGCAGGAAGGGGTCTGGTAAGACTGGAGTACCGACAGCGATG
GGATGAAGCCTTCAGAAAGTTTCTAAAGGACTTGGCTTCCCGGAAACCTCTTGTGCTGTGTGGGGATCTCAATGTGGCTC
ATGAAGAAATAGACCTTCGTAACCCCAAAGGAAACAAAAAGAATGCTGGTTTTACTCCCCAGGAGCGCCAAGGCTTTGGG
GAAATGCTACAGGCTGTACCACTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCCTACGCTTATACTTTCTGGAC
TTACATGATGAATGCCCGCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTGTCTCACTCTCTTTTACCTGCTT
TGTGCGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCTTTACCTAGCACTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 7 .93 RPM |
| SRP017611_kidney | 31 .96 RPM |
| SRP017611_brain | 33 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002745 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004855 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000021872 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000035960 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000013335 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000166 | within_species_paralog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010096 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000006405 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_2971 | 68.33 | 93.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000009663 retrocopies