Parental gene: | PSMG4, ENSSSCG00000001005 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) assembly chaperone 4 [Source:HGNC Symbol;Acc:21108] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 7:2041197..2048693(+) |
>ENSSSCG00000001005
ATGGAGGGGCCGCGGGCCGCCGCGGCCGGGGACGTCTCTCTGCACAACTTCACCGCGAGGCTGTGGGAGCAGCTCGTCCA
CTTCCACGTCATGCGGCTGACGGACTCGCTCTTCCTGTGGGTGGGGGCCACGCCGCACCTGCGCAACCTGGCCGTGGCCA
TGTGCACCCGCTACGACCCCATCCCCGTGTCCACCGCCCTCCTCGGGGACACGTCAGACCCGACGTCCACTGGCCTCGCC
CAGCGTTTAGCCAGGAAGACCAGCAAACAGGTGTTTGTCAGCTACAACCTCCAGAACACGGACAGCAGCTTCGCGTTACT
CGTGGAAAACAGGATCAAGGAGGAGATGGAGGCTTTCCCGGAGAAGTTCTAG
ATGGAGGGGCCGCGGGCCGCCGCGGCCGGGGACGTCTCTCTGCACAACTTCACCGCGAGGCTGTGGGAGCAGCTCGTCCA
CTTCCACGTCATGCGGCTGACGGACTCGCTCTTCCTGTGGGTGGGGGCCACGCCGCACCTGCGCAACCTGGCCGTGGCCA
TGTGCACCCGCTACGACCCCATCCCCGTGTCCACCGCCCTCCTCGGGGACACGTCAGACCCGACGTCCACTGGCCTCGCC
CAGCGTTTAGCCAGGAAGACCAGCAAACAGGTGTTTGTCAGCTACAACCTCCAGAACACGGACAGCAGCTTCGCGTTACT
CGTGGAAAACAGGATCAAGGAGGAGATGGAGGCTTTCCCGGAGAAGTTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 55 .75 RPM |
| SRP014902_testis | 43 .42 RPM |
| SRP018856_adipose | 11 .20 RPM |
| SRP018288_kidney | 11 .13 RPM |
| SRP018288_lung | 8 .04 RPM |
| SRP018288_liver | 8 .16 RPM |
| SRP018288_heart | 7 .10 RPM |
| SRP035408_liver | 11 .77 RPM |
| SRP035408_brain | 26 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000014430 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000031249 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000024906 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000039265 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000006146 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_362 | 67.27 | 88.62 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_656 | 65.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sscr_657 | 64.80 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000001005 retrocopies