Parental gene:

ZXDC, ENSSSCG00000001824

Aliases:None
Description:ZXD family zinc finger C [Source:HGNC Symbol;Acc:28160]
Organism:Pig (Sus scrofa)
Coordinates:7:58671599..58706483(+)


>ENSSSCG00000001824
ATGGACGTGCCGGCGGTGCTCGCCCCCCCGGCTCCGGCCCCGGCCCAGCGCGGACCCCAGCTCGGGGGCGGCCCCGGTCG
GACCCGCAGAGCTCCGGGCCCTGCGCGCCGCCGTCTCCTGCTGCTGCGGAGCCCCGAGGACGACGCGCAGGGGCAGCAGT
GCGGAGAGGCCCGGCCAGCGGGCCCCGGCGGCGGCGGCGGCGGCGGCGGAGGCGACTCCTTCGTGGTGCTGCTGGAAGTG
GCGCGCGGCGCGGCCGAGGCCCCGGGGCGGCTGGAGCCCGAGCCCGAGCCCAGCGTCGCCGCGAGCCCGGCCGGGCGCCC
AGCGCAGGCCCTCGGCGGCGAAGCCCTTGTTTCCCCTACCGGCGCGCCTCTCGCGAGCCCCGGGGCCGCCGGCGGCCAGG
ACCTGGTGGTGCGCTTAGAGCGCGGCGTCCTCGCGCTTGCTGCACCGCCCCGGGGTTCTCCGCCGGACCGGGAGGCCGCC
TGTCCGGCCGAGGCCCGCCGCGCGCCCGCCGGTCCCGGCTACCGCTGCCCGGAGCCACAGTGCGCTCTCCTCTTCGCCAA
GAAGCACCAGCTCAAGGTGCACCTGCTGACGCACAGCGGCGGCCAGGGCCGGCGGCCCTTCAAGTGCCCGCTGGACGGCT
GCGGCTGGGCCTTCACCACGTCCTACAAGCTCAAGCGGCACCTGCAGTCGCACGACAAGCTGCGGCCCTTTGGCTGCCCG
GTGGGCGGCTGCGGCAAGAAGTTCACCACCGTATACAACCTCAAGGCGCACATGAAGGGCCACGAGCAGGAGAGCCTGTT
CAAGTGCGAGGTGTGCGCCGAGCGCTTCCCCACGCATGCCAAGCTCAGCTCGCACCAGCGCAGCCACTTCGAGCCCGAGC
GGCCCTACAAGTGCGACTATCCCGGCTGTGAGAAGACGTTCATCACAGTGAGTGCTCTCTTCTCCCACAACCGGGCCCAC
TTCAGGGAGCAGGAACTCTTCTCTTGCTCCTTCCCTGGTTGCAGTAAGCAGTATGACAAAGCCTGTCGCCTGAAAATCCA
CCTGAGAAGCCATACGGGCGAAAGACCTTTTATCTGTGACTCTGACAGCTGTGGCTGGACCTTCACCAGCATGTCAAAAC
TCCTACGGCACAAAAGGAAACACGAGGATGACCGGAGGTTTGCCTGCCCTGTGGAGGGCTGTGGGAAGTCGTTTACGAGG
GCAGAGCACCTGAAGGGCCACAGCGTCACCCACCTGGGCACAAAGCCCTTTGTGTGTCCTGTAGAAGGGTGCTGTGCCCG
GTTCTCTGCGAGGAGCAGCCTCTACATTCACTCCAAGAAGCACCTGCAGGACGTGGCCCCAAAGAGCAGGTGCCCAGCCT
CCAGCTGTGACAGGCTCTTTGCCTCCAAGCACAACGGGAAGGCGCACGTGGGCAGGCAGCCCCGCCGGCACCCAGACCTC
TTCCCTCCGCTAGGAGCTCCGAGTGCCCTTACGCCCAGCAGTGACCTCAGTGGCCCAGGCCAGAGCGAGTTCAGCAACGT
GGACCTGGCACTCCTCTTCTCCGACACGCCTGGTGACAATAGCGGTGCCGCTGGGGCCTCTGACGAGGCGCTAAGCGCTG
GGATCCTGACGATTGATGTGACTTCCATGAGCTCCTCTCTGGGAGGGGACCTGCCCACTAGTCACACTTCCTTAGGGCCC
ATGGACCCGCTGGTCTTGGTGGCCCACAGTGACGTGCCTCCAGGCCCAGACAGCCCCCTCGTCCTTGGGACAGCGGCCAC
GGTCCTCCAGCAGCGCAGCTTCGCCATGGACGATACGCAAGGTGTAGGCGCAGGAGCGCTGGGCTGCTTGGTGGCTGTGC
CTGTGAAGAGCTTGAGCCTGGACCCACCGGCTTTGACCTCCGGCAGCAGTTCGGCAGCGAACACCTGCATGCCAGCCTCT
GCCAGCAGCACTCAGGGAAACACCAGTGTCCCAGAGCTGCTGGTTCCCATCAAAGTGGAAGCAGACTCGCCTCCTGGCCC
CGACACCATCAGGCAGCAGGAGCGAAGCAGAGGGGCGCCTCGGCCTGTGCTGTCCAGCCCCGCAGAGGAGCACGGGCCCC
AGACAGACGCGGGGCTTGGTGCGGGGACCAGCGGCCTCTCCCTGGAAGGTGGGGGCTCAGCAAGAACTGATTCCCGAGCC
ATTCAACTGGCCAAGAAAATAAAGCAGAAAGGAGCTGGGAGCAGCGCAGGAGCTACGGGGCCAGCTCAGACCCGAGGGAA
AGATGATGACCCGGGCAGCCCCACTTGTGTGCCTGCCAGCCCGAGTGGCTGGGTGTGGGGCAGCCTCGTGGTGCCCAGCG
TCCAGGTCCAGCTGCTGCAGGACGACCCTGCGGGTGAAGCAGGCCTGCCGCTGGCGCTCAGCCCCCAGCCCTCTGCCTTC
CGCCCCCTGCTCGCCATCGATTTTCCCGTCTACGTCCTCCAGGAGGTGCTTCCTGCAGCTGGAGGGGCTGCCGGGCCTGA
GGACACGCAGCGCTCGGGGAGCACGGCCAGCCTGCGCGACCCGCAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 80 .30 RPM
SRP014902_testis 132 .11 RPM
SRP018856_adipose 22 .13 RPM
SRP018288_kidney 36 .35 RPM
SRP018288_lung 46 .94 RPM
SRP018288_liver 16 .31 RPM
SRP018288_heart 14 .41 RPM
SRP035408_liver 19 .40 RPM
SRP035408_brain 38 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006438 ortholog_one2one 1 retrogene
retro_amel_1830,
Equus caballus ENSECAG00000026954 ortholog_one2one 2 retrogenes
retro_ecab_1064, retro_ecab_1107,
Mus musculus ENSMUSG00000034430 ortholog_one2one 1 retrogene
retro_mmus_44,
Rattus norvegicus ENSRNOG00000025818 ortholog_one2one 1 retrogene
retro_rnor_2933,
Ictidomys tridecemlineatus ENSSTOG00000007207 ortholog_one2one 1 retrogene
retro_itri_60,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_50 66.54 59.86
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Download FASTA sequences of all ENSSSCG00000001824 retrocopies