Parental gene: | ZXDC, ENSECAG00000026954 |
| Aliases: | None |
| Description: | ZXD family zinc finger C [Source:HGNC Symbol;Acc:28160] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | Un0001:538945..577295(-) |
>ENSECAG00000026954
AGCGCGGGTCCTGCGGCTCCAAGATTCATGAGCCCCGCCACGCAGAGCGCGCTGTCATTCGCCAGTAAGCACCAGCTCAA
GGTGCACCTGGTGACGCACGGCGGCAGCCAGGGCCGGCCCTTCAAGTGCCCCCTGGACGGCTGCGGCTGGGCCTTCACCT
CCTCCTACAAGCTCAAGCGGCACCTACAGTCGCACGACAAGCTGCGGCCCTTCGGCTGCCCGGTGGGCGGCTGCGGCAAG
AAGTTCACCACCGTGTACAACCTCAAGGCGCACATGAAGGGCCACGAGCAGGAGAGCCTGTTCAAGTGCGAGGTGTGTGC
CGAGCGCTTCCCCACGCACGCCAAGCTCAGCTCCCACCAGCGCAGCCACTTCGAGCCCGAGCGGCCCTACAAGTGCGACT
TTCCCGGCTGCGAGAAGACGTTCATCACAGTGAGTGCTCTGTTTTCCCATAACCGAGCCCACTTCAGGGAACAAGAACTC
TTTTCTTGCTCGTTTCCTGGATGCAGCAAACAGTATGACAAAGCCTGTCGCCTGAAAATCCACCTGAGAAGCCATACAGG
TGAAAGACCTTTTATTTGTGACTCTGACAGTTGTGGCTGGACCTTCACCAGCATGTCTAAACTCCTAAGGCACAAAAGGA
AACACGACGACGACCGGAGGTTTACCTGCTCTGTGGAGGGCTGTGGGAAATCATTCACGAGAGCGGAGCATCTGAAAGGC
CACAGCATCACGCATCTGGGCACAAAGCCATTTGAGTGTCCTGTGGAAGGGTGCTGTGCTAGATTCTCTGCTCGTAGCAG
TCTCTATATCCATTCTAAGAAACACCTGCAGGACGTAGGTGCTCCGAAAAGCCGTTGCCCAGTCTCCAGCTGCAACAGAC
TCTTCACCTCCAAGCACAGCATGAAGGCGCACGTGGTCAGACAGCACAGCCGGCGCCCAGATCTCTTCCCTCAGCTAGGA
GCTCCGAGTTCTCTCACGCCCAGCAGTGAGCTGGGTGGCCCAGGCCAAAGTGAGCTCAACAACATAGACCTGGCAGCACT
CTTCTCCGACACACCTGGTGACGGTGGTAGTGCAGTGGGGGCCTCGGATGAGGCCCTGAACTCTGGAATCCTGACCATCG
ATGTAACTTCTGTGAGCTCCTCTCTCGGGGGGAACCTCCCTGCTAATAATAGTTCCTTAGGGCCAATGGACCCGCTGGTC
TTGGTGGCCCACAGTGACATTCCTCCAGGCCTGGACAGCCCTCTTGTTCTCGGGACAGCAGCCACAGTGCTTGAGCAGAG
CAGCTTCAGTGTGGATGACGTGCAGACTGTAAGTGCAGGAGCGCTGGGCTGTCTGGTAGCTCTGCCTGTGAAGGACGTGG
GCCAGGACCCAGAGGCTGTGACCTCCAGCAGCAATTTAGCAGCGAACACCACCACACTGACCTCTTCAAGTGTCCCCCAG
GGAAGCACCGGTGTCCCAGAACTGCAGGCGCCGATCAAAGTGGAGCCAGCCTCACCTCCTGGCCCTGGTGCTTTCAGGCA
GCGAGAACGAAGCAGAGGGGCGTCCCAGTCTGTGTCCTGCAGCCCTGTGGAAAAGCCCTGTCCTCAGAGAGACACAGGGC
CCAGTGCACACACTTTTCTTTGGTCTCAGGAAAGTGAGGGCTCAGCAAGAACTGATTCCCGAGCCATTCAACTAGCCAAG
AAAAAAAAGCAGAAAGGAACTGGGAGCAATGCAGGCGCCCCGGGGTCTGCTCAGAGGAGGACGAAAGGTGGCAGACTCAG
TCCTGCTCACTTCCACACGAGCCAGAGCGGTTGGTTGTGTGGGAACCTCGTGGTGCCCAGTGGAGGCCTGCCAGCACCAG
CTCCAGCGGCCGGGGTGCAGTGCTTTCAGGTCCAGTTACTGCAGGTAAGAACCAGCGAGCCAGGAGCCTTGCCGGTGGCC
CTCAGCCCGCAGCCGCCCACCTTCCGCCCGCTGCTCGCCGTTGACATGCCCGTCTATGTCCTCCAGGAGGTGCTTCCTGC
AGCTGGCGGGGCCGCTGGACCTGAGGACGTGCAGTGCCCAGGGAGCACGGTCAACCTGCGGGACCTGCAG
AGCGCGGGTCCTGCGGCTCCAAGATTCATGAGCCCCGCCACGCAGAGCGCGCTGTCATTCGCCAGTAAGCACCAGCTCAA
GGTGCACCTGGTGACGCACGGCGGCAGCCAGGGCCGGCCCTTCAAGTGCCCCCTGGACGGCTGCGGCTGGGCCTTCACCT
CCTCCTACAAGCTCAAGCGGCACCTACAGTCGCACGACAAGCTGCGGCCCTTCGGCTGCCCGGTGGGCGGCTGCGGCAAG
AAGTTCACCACCGTGTACAACCTCAAGGCGCACATGAAGGGCCACGAGCAGGAGAGCCTGTTCAAGTGCGAGGTGTGTGC
CGAGCGCTTCCCCACGCACGCCAAGCTCAGCTCCCACCAGCGCAGCCACTTCGAGCCCGAGCGGCCCTACAAGTGCGACT
TTCCCGGCTGCGAGAAGACGTTCATCACAGTGAGTGCTCTGTTTTCCCATAACCGAGCCCACTTCAGGGAACAAGAACTC
TTTTCTTGCTCGTTTCCTGGATGCAGCAAACAGTATGACAAAGCCTGTCGCCTGAAAATCCACCTGAGAAGCCATACAGG
TGAAAGACCTTTTATTTGTGACTCTGACAGTTGTGGCTGGACCTTCACCAGCATGTCTAAACTCCTAAGGCACAAAAGGA
AACACGACGACGACCGGAGGTTTACCTGCTCTGTGGAGGGCTGTGGGAAATCATTCACGAGAGCGGAGCATCTGAAAGGC
CACAGCATCACGCATCTGGGCACAAAGCCATTTGAGTGTCCTGTGGAAGGGTGCTGTGCTAGATTCTCTGCTCGTAGCAG
TCTCTATATCCATTCTAAGAAACACCTGCAGGACGTAGGTGCTCCGAAAAGCCGTTGCCCAGTCTCCAGCTGCAACAGAC
TCTTCACCTCCAAGCACAGCATGAAGGCGCACGTGGTCAGACAGCACAGCCGGCGCCCAGATCTCTTCCCTCAGCTAGGA
GCTCCGAGTTCTCTCACGCCCAGCAGTGAGCTGGGTGGCCCAGGCCAAAGTGAGCTCAACAACATAGACCTGGCAGCACT
CTTCTCCGACACACCTGGTGACGGTGGTAGTGCAGTGGGGGCCTCGGATGAGGCCCTGAACTCTGGAATCCTGACCATCG
ATGTAACTTCTGTGAGCTCCTCTCTCGGGGGGAACCTCCCTGCTAATAATAGTTCCTTAGGGCCAATGGACCCGCTGGTC
TTGGTGGCCCACAGTGACATTCCTCCAGGCCTGGACAGCCCTCTTGTTCTCGGGACAGCAGCCACAGTGCTTGAGCAGAG
CAGCTTCAGTGTGGATGACGTGCAGACTGTAAGTGCAGGAGCGCTGGGCTGTCTGGTAGCTCTGCCTGTGAAGGACGTGG
GCCAGGACCCAGAGGCTGTGACCTCCAGCAGCAATTTAGCAGCGAACACCACCACACTGACCTCTTCAAGTGTCCCCCAG
GGAAGCACCGGTGTCCCAGAACTGCAGGCGCCGATCAAAGTGGAGCCAGCCTCACCTCCTGGCCCTGGTGCTTTCAGGCA
GCGAGAACGAAGCAGAGGGGCGTCCCAGTCTGTGTCCTGCAGCCCTGTGGAAAAGCCCTGTCCTCAGAGAGACACAGGGC
CCAGTGCACACACTTTTCTTTGGTCTCAGGAAAGTGAGGGCTCAGCAAGAACTGATTCCCGAGCCATTCAACTAGCCAAG
AAAAAAAAGCAGAAAGGAACTGGGAGCAATGCAGGCGCCCCGGGGTCTGCTCAGAGGAGGACGAAAGGTGGCAGACTCAG
TCCTGCTCACTTCCACACGAGCCAGAGCGGTTGGTTGTGTGGGAACCTCGTGGTGCCCAGTGGAGGCCTGCCAGCACCAG
CTCCAGCGGCCGGGGTGCAGTGCTTTCAGGTCCAGTTACTGCAGGTAAGAACCAGCGAGCCAGGAGCCTTGCCGGTGGCC
CTCAGCCCGCAGCCGCCCACCTTCCGCCCGCTGCTCGCCGTTGACATGCCCGTCTATGTCCTCCAGGAGGTGCTTCCTGC
AGCTGGCGGGGCCGCTGGACCTGAGGACGTGCAGTGCCCAGGGAGCACGGTCAACCTGCGGGACCTGCAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 25 .78 RPM |
| SRP021940_embryo | 40 .79 RPM |
| SRP021940_cerebellum | 50 .63 RPM |
| SRP021940_testis | 48 .66 RPM |
| SRP021940_placental_villous | 27 .18 RPM |
| SRP021940_articular_cartilage | 33 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006438 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000014803 | within_species_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000034430 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000025818 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000001824 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000007207 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_1064 | 68.81 | 73.91 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_1107 | 68.53 | 61.88 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000026954 retrocopies