Parental gene:

PTP4A2, ENSSSCG00000003605

Aliases:None
Description:protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635]
Organism:Pig (Sus scrofa)
Coordinates:6:82337829..82348373(-)


>ENSSSCG00000003605
ATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACCCACAACCCTACCAATGCTACCCT
CAACAAGTTCACAGAGGAACTTAAGAAGTATGGAGTGACAACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCAC
CAGTTGAAAAGGAAGGAATCCACGTTCTAGATTGGCCATTTGACGATGGAGCACCACCCCCTAATCAGATAGTAGATGAT
TGGCTAAACCTACTAAAAACCAAATTTCGTGAAGAGCCAGGTTGCTGTGTTGCAGTGCACTGTGTTGCAGGATTGGGAAG
GGCACCTGTGCTGGTTGCACTTGCTTTGATTGAATGTGGAATGAAGTATGAAGATGCAGTTCAGTTTATAAGACAGAAAA
GAAGGGGAGCATTCAATTCCAAACAGCTGCTTTACCTGGAGAAATACCGACCTAAGATGCGATTACGCTTCAGAGATACC
AATGGGCATTGCTGTGTTCAGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 95 .70 RPM
SRP014902_testis 44 .13 RPM
SRP018288_heart 174 .58 RPM
SRP018288_kidney 47 .87 RPM
SRP018288_liver 41 .74 RPM
SRP018288_lung 116 .08 RPM
SRP018856_adipose 32 .19 RPM
SRP035408_brain 88 .71 RPM
SRP035408_liver 69 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039121 ortholog_one2one 1 retrogene
retro_btau_638,
Callithrix jacchus ENSCJAG00000006539 ortholog_one2one 2 retrogenes
retro_cjac_3257, retro_cjac_566,
Homo sapiens ENSG00000184007 ortholog_one2one 4 retrogenes
retro_hsap_1069, retro_hsap_1754, retro_hsap_4331, retro_hsap_944,
Mus musculus ENSMUSG00000028788 ortholog_one2one 2 retrogenes
retro_mmus_1894, retro_mmus_2432,
Nomascus leucogenys ENSNLEG00000002137 ortholog_one2one 3 retrogenes
retro_nleu_2880, retro_nleu_2956, retro_nleu_3015,
Oryctolagus cuniculus ENSOCUG00000002060 ortholog_one2one 1 retrogene
retro_ocun_1673,
Otolemur garnettii ENSOGAG00000029603 ortholog_one2one 1 retrogene
retro_ogar_3341,
Pongo abelii ENSPPYG00000001606 ortholog_one2one 3 retrogenes
retro_pabe_1507, retro_pabe_808, retro_pabe_890,
Rattus norvegicus ENSRNOG00000050044 ortholog_one2one 1 retrogene
retro_rnor_305,
Ictidomys tridecemlineatus ENSSTOG00000002775 ortholog_one2one 2 retrogenes
retro_itri_1165, retro_itri_152,
Tupaia belangeri ENSTBEG00000006790 ortholog_one2one 1 retrogene
retro_tbel_4601,
Tursiops truncatus ENSTTRG00000016571 ortholog_one2one 2 retrogenes
retro_ttru_1396, retro_ttru_1402,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1186 58.27 75.45
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Download FASTA sequences of all ENSSSCG00000003605 retrocopies