Parental gene:

ARMC1, ENSSSCG00000006220

Aliases:None
Description:armadillo repeat containing 1 [Source:HGNC Symbol;Acc:17684]
Organism:Pig (Sus scrofa)
Coordinates:4:75141922..75174624(+)


>ENSSSCG00000006220
ATGAATTCTTCCTCCTCCACCATGAACGAAGAACCCGATGCTCTCTCCGTGGTTAACCAGCTCCGGGATTTAGCAGCAGA
TCCATTAAATCGAAGAGCCATTGTCCAGGATCAGGGATGTCTGCCTGGCCTTATTTTATTTATGGACCATCCCAACCCCC
CTGTGCACTCAGCTTTGCTTGCTCTTCGATACTTGGCAGAGTGCCGTGCTAACAGAGAAAAGATGAAAGGAGAACTGGGT
ATGATGTTAAGCTTGCAAAATGTTATACAAAAGACTACAACTCCAGGAGAAACAAAACTGCTGGCCTCTGAAATCTATGA
CATTCTTCAATCTTCTAATATGGCAGATGGTGATAGTTTCAATGAAATGAATTCACGTCGAAGGAAAGCTCAGTTTTTTC
TGGGAACCACAAACAAACGTGCCAAAACAGTGGTTTTGCATATAGATGGTCTTGATGATACGTCTCGGAGAAATCTATGT
GAAGAGGCTTTGTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCCGTTCAGAGATGTGTGGTGAGAATCCG
TTCAGATCTGAAAGCAGAGGCTTTGGCATCAGCAATAGCATCAACCAAGGTTATGAAGGCTCAGCAAGTTGTGAAAAGTG
AAAGTGGAGAAGAGATGCTGGTCCCATTCCAAGACACACCTGTGGAAGTAGAACAGAATACAGAGCTGCCCGACTACCTG
CCTGAGGATGAGAGTCCCACAAAGGAGCAGGACAAAGCAGTGTCCCGGGTGGGCTCCCACCCAGAAGGGGGGGCCAGCTG
GCTGAGCACAGCTGCAAACTTTTTATCCAGATCGTTTTACTGGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 10 .75 RPM
SRP014902_testis 42 .01 RPM
SRP018856_adipose 13 .94 RPM
SRP018288_kidney 27 .19 RPM
SRP018288_lung 23 .32 RPM
SRP018288_liver 25 .59 RPM
SRP018288_heart 24 .86 RPM
SRP035408_liver 24 .92 RPM
SRP035408_brain 55 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015901 ortholog_one2one 1 retrogene
retro_btau_1447,
Homo sapiens ENSG00000104442 ortholog_one2one 1 retrogene
retro_hsap_3100,
Gorilla gorilla ENSGGOG00000022803 ortholog_one2one 1 retrogene
retro_ggor_2129,
Myotis lucifugus ENSMLUG00000014037 ortholog_one2one 1 retrogene
retro_mluc_2058,
Nomascus leucogenys ENSNLEG00000003916 ortholog_one2one 1 retrogene
retro_nleu_1518,
Oryctolagus cuniculus ENSOCUG00000000392 ortholog_one2one 2 retrogenes
retro_ocun_1437, retro_ocun_782,
Pongo abelii ENSPPYG00000018630 ortholog_one2one 1 retrogene
retro_pabe_2474,
Pan troglodytes ENSPTRG00000020298 ortholog_one2one 1 retrogene
retro_ptro_2096,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1027 91.17 100.00
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Download FASTA sequences of all ENSSSCG00000006220 retrocopies