Parental gene:

ENSSSCG00000017768

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:12:46942106..46945674(+)


>ENSSSCG00000017768
ATGGCGCCGAAGGCAAAGAAGGAAGCCCCTGCCCCTCCCAAAGCCGAAGCCAAGGCAAAGGCTTTGAAGGCCAAGAAAGC
AGTGTTGAAAGGCGTCCACAGTCACAAAAAAAAGAAGATCCGGACGTCACCCACCTTCCGACGGCCCAAAACACTGCGAC
TCAGAAGGCAGCCCAAATATCCTCGGAAGAGTGCCCCTAGGAGAAACAAGCTTGACCACTATGCCATCATCAAGTTCCCC
CTCACCACTGAGTCAGCCATGAAGAAAATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTCAAGGCCAACAAGCA
CCAGATTAAACAGGCTGTGAAGAAGCTCTATGACATTGATGTGGCTAAGGTCAACACTTTGATCAGGCCTGATGGAGAGA
AGAAGGCATATGTTCGACTAGCTCCTGACTATGATGCTTTGGATGTTGCTAACAAAATTGGGATCATCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 1 .06 RPM
SRP014902_testis 10 .18 RPM
SRP018856_adipose 1 .23 RPM
SRP018288_kidney 0 .99 RPM
SRP018288_lung 2 .75 RPM
SRP018288_liver 1 .92 RPM
SRP018288_heart 1 .05 RPM
SRP035408_liver 0 .56 RPM
SRP035408_brain 0 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000013126 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000019487 possible_ortholog 65 retrogenes
Felis catus ENSFCAG00000004021 possible_ortholog 35 retrogenes
Homo sapiens ENSG00000198242 possible_ortholog 57 retrogenes
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
Nomascus leucogenys ENSNLEG00000002872 possible_ortholog 60 retrogenes
Procavia capensis ENSPCAG00000017002 possible_ortholog 30 retrogenes
Pongo abelii ENSPPYG00000008108 possible_ortholog 49 retrogenes
Pteropus vampyrus ENSPVAG00000002922 possible_ortholog 32 retrogenes
Rattus norvegicus ENSRNOG00000023344 possible_ortholog 6 retrogenes
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
Sus scrofa ENSSSCG00000029802 within_species_paralog 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_239 80.14 90.38
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_sscr_356 79.31 73.08
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_sscr_418 91.67 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_sscr_598 64.44 85.26
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_sscr_638 80.52 97.44
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_sscr_952 72.96 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_sscr_1025 85.90 100.00
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_sscr_1047 56.25 100.00
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_sscr_1133 81.90 73.08
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSSSCG00000017768 retrocopies