Parental gene:

RPL23A, ENSACAG00000005311

Aliases:None
Description:None
Organism:Anole lizard (Anolis carolinensis)
Coordinates:AAWZ02039090:1431..9505(+)


>ENSACAG00000005311
ATGGCGCCGAAAGTCAAGAAGGAGGCTGTCCCGGCTAAGACCGAGGCGAAATCTAAGGCCCTGAAAGCCAAGAAAGCAGT
CCTGAAGGGGGTCCACAGTCACAAGAAGAAGAAGATGCGCACGTCCCCCACCTTCCGGAGGCCCAAAACCCTGCGGTTAC
GGCGGCAGCCCAAATATCCCCGGAAGAGCGCGCCCAGGAGAAACAAGTTGGACCATTATGCCATCATCAAGTTCCCGCTG
ACCACCGAGTCGGCCATGAAGAAGATCGAGGACAACAACACCTTGGTCTTCATTGTGGACGTCAAGGCCAATAAGCACCA
GATCAAGCAGGCCGTCAAGAAGCTGTACGACATTGACGTGGCAAAAGTCAACACGCTTATCAGGCCCGATGGCGAAAAGA
AGGCCTACGTTCGTCTTGCTCCGGATTACGATGCTCTAGATGTAGCCAATAAGATTGGTATCATCTAA

Library Parental gene expression (RPM)
SRP009831_adrenal 1239 .00 RPM
SRP009831_brain 266 .43 RPM
SRP009831_dewlap 446 .38 RPM
SRP009831_embryo 672 .26 RPM
SRP009831_heart 476 .33 RPM
SRP009831_liver 628 .13 RPM
SRP009831_lung 454 .06 RPM
SRP009831_ovary 308 .06 RPM
SRP009831_skeletal_muscle 263 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004684 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000013126 possible_ortholog 7 retrogenes
Cavia porcellus ENSCPOG00000001452 possible_ortholog 6 retrogenes
Equus caballus ENSECAG00000008928 possible_ortholog 1 retrogene
Felis catus ENSFCAG00000004021 possible_ortholog 35 retrogenes
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000008108 possible_ortholog 49 retrogenes
Rattus norvegicus ENSRNOG00000023344 possible_ortholog 6 retrogenes
Sarcophilus harrisii ENSSHAG00000014549 ortholog_one2many 13 retrogenes
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
Sus scrofa ENSSSCG00000029802 possible_ortholog 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_152 93.00 64.52
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2. retro_acar_173 84.35 74.19
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Download FASTA sequences of all ENSACAG00000005311 retrocopies