RetrogeneDB ID: | retro_acar_173 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343304.1:613245..613587(-) | ||
Located in intron of: | ENSACAG00000011262 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSACAG00000005311 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.35 % |
Parental protein coverage: | 74.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQ |
TS.TF.R.KTLRL...PKYP.KSAPRRNKLDHYAIIKFPLTTE.AMKKI.DN.TLVFIVD.KANKHQIKQ | |
Retrocopy | TSHTFWRSKTLRLW*PPKYPWKSAPRRNKLDHYAIIKFPLTTELAMKKIKDN-TLVFIVDIKANKHQIKQ |
Parental | AVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII |
AVKKLYDIDVAKVNTLI.PDG.KKAY...APDYDALDVA.KI.II | |
Retrocopy | AVKKLYDIDVAKVNTLISPDGKKKAYIHFAPDYDALDVAKKISII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 1239 .00 RPM |
SRP009831_brain | 0 .00 RPM | 266 .43 RPM |
SRP009831_dewlap | 0 .00 RPM | 446 .38 RPM |
SRP009831_embryo | 0 .06 RPM | 672 .26 RPM |
SRP009831_heart | 0 .00 RPM | 476 .33 RPM |
SRP009831_liver | 0 .00 RPM | 628 .13 RPM |
SRP009831_lung | 0 .00 RPM | 454 .06 RPM |
SRP009831_ovary | 0 .00 RPM | 308 .06 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 263 .18 RPM |