Parental gene:

SRSF10, ENSSSCG00000021615

Aliases:None
Description:serine/arginine-rich splicing factor 10 [Source:HGNC Symbol;Acc:16713]
Organism:Pig (Sus scrofa)
Coordinates:GL893661.1:47057..59206(+)


>ENSSSCG00000021615
ATGTCTCGGTATCTGCGTCCCCCCAATACGTCTCTGTTCGTGAGGAACGTGGCCGGATGTTTTAGGTCTGAAGATTTGCG
ACGTGAATTTGGTCGTTATGGTCCTATAGTTGATGTGTATGTTTTGCTTAAATTTTGGACCAGGTGGAAATTTTTGTTTT
CATATGCAAAATTTGAGGATGTTCGTGATGCTGAAGATGCTTTGCATAATTTGGACAGAAAATGGATTTGTGGACGCCAA
ATTGAAATACAGTTCGCACAGGGGGATCGGAAGACTCCAAATCAGATGAAAGCAAAGGAAGGGAGAAATGTGTACAGTTC
TTCACGCTATGATGATTATGACAGATATAGGCGTTCTAGAAGCCGAAGTTACGAAAGAAGGAGATCAAGAAGTCGGTCCT
TTGATTACAACTATAGACGATCTTATAGCCCTAGAAACAGTAGACCGACTGGAAGACCACGGCGTAGCAGAAGCCATTCC
GACAATGATAGACCAAACTGCAGCTGGAATACCCAGTACAGTTCTGCTTACTACACTTCAAGAAAGATCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 13 .27 RPM
SRP014902_testis 47 .95 RPM
SRP018288_heart 44 .06 RPM
SRP018288_kidney 44 .03 RPM
SRP018288_liver 30 .06 RPM
SRP018288_lung 59 .67 RPM
SRP018856_adipose 22 .35 RPM
SRP035408_brain 18 .52 RPM
SRP035408_liver 56 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004836 ortholog_one2one 1 retrogene
retro_chof_7,
Callithrix jacchus ENSCJAG00000020883 possible_ortholog 9 retrogenes
retro_cjac_1126, retro_cjac_1170, retro_cjac_2176, retro_cjac_2595, retro_cjac_2638, retro_cjac_3852, retro_cjac_628, retro_cjac_705, retro_cjac_864,
Cavia porcellus ENSCPOG00000024533 possible_ortholog 1 retrogene
retro_cpor_1098,
Dasypus novemcinctus ENSDNOG00000008699 possible_ortholog 3 retrogenes
retro_dnov_1327, retro_dnov_1809, retro_dnov_2244,
Erinaceus europaeus ENSEEUG00000014286 ortholog_one2one 1 retrogene
retro_eeur_522,
Homo sapiens ENSG00000188529 ortholog_one2one 5 retrogenes
retro_hsap_1343, retro_hsap_1940, retro_hsap_2445, retro_hsap_3054, retro_hsap_4295,
Myotis lucifugus ENSMLUG00000028520 ortholog_one2one 1 retrogene
retro_mluc_89,
Mustela putorius furo ENSMPUG00000015845 ortholog_one2one 1 retrogene
retro_mputfur_353,
Nomascus leucogenys ENSNLEG00000013180 ortholog_one2one 3 retrogenes
retro_nleu_1647, retro_nleu_1825, retro_nleu_202,
Oryctolagus cuniculus ENSOCUG00000029326 possible_ortholog 1 retrogene
retro_ocun_717,
Pongo abelii ENSPPYG00000001726 ortholog_one2one 4 retrogenes
retro_pabe_1115, retro_pabe_1601, retro_pabe_1796, retro_pabe_2529,
Ictidomys tridecemlineatus ENSSTOG00000000956 ortholog_one2one 1 retrogene
retro_itri_1333,
Tursiops truncatus ENSTTRG00000016150 ortholog_one2one 2 retrogenes
retro_ttru_1098, retro_ttru_695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_528 67.60 96.72
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2. retro_sscr_554 68.16 96.72
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Download FASTA sequences of all ENSSSCG00000021615 retrocopies