RetrogeneDB ID: | retro_hsap_3054 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:78879156..78879930(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000248926 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF10 | ||
Ensembl ID: | ENSG00000188529 | ||
Aliases: | SRSF10, FUSIP1, FUSIP2, NSSR, SFRS13, SFRS13A, SRp38, SRrp40, TASR, TASR1, TASR2 | ||
Description: | serine/arginine-rich splicing factor 10 [Source:HGNC Symbol;Acc:16713] |
Percent Identity: | 76.05 % |
Parental protein coverage: | 99.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SRYLRPPN-TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN |
S.YLRPP....LF.RN.A...R..DL..EFG.Y.PIVDVYVPLDFYT..PRG.AYVQ.EDVRDAEDALHN | |
Retrocopy | SSYLRPPR<VPLFIRNGASNSRFKDLWHEFGHYDPIVDVYVPLDFYTHCPRGVAYVQLEDVRDAEDALHN |
Parental | LDRKWICGRQIEIQFAQGDRKTPNQMKAK-EGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYR |
LDRKWICG.Q.E.....G....P.....K.EGR.VYSSSRY.DYDRYR.SRS.SYE.RRSRSRSF.Y.YR | |
Retrocopy | LDRKWICGCQME-TVCTGGLEDPKSDESK>EGRSVYSSSRY-DYDRYRCSRSQSYE-RRSRSRSFAYIYR |
Parental | RSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTS |
RS.SPR.S..TGRP..SRSHS.NDR.KH.N.SFSRSKSNSRSRSKSQPKKEMKAKS.SRSASH.KTRGTS | |
Retrocopy | RSCSPRKSGWTGRPWCSRSHSSNDRVKH*NQSFSRSKSNSRSRSKSQPKKEMKAKSCSRSASHAKTRGTS |
Parental | KTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQSRSRSKSRSRSWTSPKSSGH |
KTDSKT.YKS.SR..KESRKKEPP.SKSQSRSQSR.RSKSRSRSWTSPKSSG. | |
Retrocopy | KTDSKTYYKSCSRHKKESRKKEPPCSKSQSRSQSRPRSKSRSRSWTSPKSSGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 2 .72 RPM |
bodymap2_adrenal | 0 .04 RPM | 6 .24 RPM |
bodymap2_brain | 0 .00 RPM | 2 .30 RPM |
bodymap2_breast | 0 .00 RPM | 2 .08 RPM |
bodymap2_colon | 0 .00 RPM | 3 .58 RPM |
bodymap2_heart | 0 .00 RPM | 2 .38 RPM |
bodymap2_kidney | 0 .00 RPM | 4 .24 RPM |
bodymap2_liver | 0 .00 RPM | 0 .82 RPM |
bodymap2_lung | 0 .00 RPM | 2 .14 RPM |
bodymap2_lymph_node | 0 .00 RPM | 3 .12 RPM |
bodymap2_ovary | 0 .06 RPM | 8 .21 RPM |
bodymap2_prostate | 0 .00 RPM | 5 .09 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .76 RPM |
bodymap2_testis | 0 .00 RPM | 4 .96 RPM |
bodymap2_thyroid | 0 .08 RPM | 5 .95 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2529 |
Callithrix jacchus | retro_cjac_2176 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |