Parental gene:

IFT20, ENSSSCG00000023719

Aliases:None
Description:intraflagellar transport 20 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:30989]
Organism:Pig (Sus scrofa)
Coordinates:12:46521341..46529178(-)


>ENSSSCG00000023719
ATGACATACCTCCTCCTGGCTGCTACTGTCACCCCTTCAGAGCAGAACTTCTCTAGGGAAGCCGGAAGGGAAACAGCTAT
GGCCAAGGATATCCTGGGTGAAGCAGGGCTGCACTTTGATGAACTGAACAAGCTGCGGGTGTTGGACCCAGAGGTTACCC
AGCAGACCATAGAGCTCAAAGAAGAGTGCAAGGACTTTGTCGACAAAATCGGCCAGTTTCAGAAAATAGTTGGTGGTTTA
ATTGAGCTTGTTGATCAACTTGCAAAAGAAGCAGAAAATGAGAAGATGAAGGCCATTGGTGCTCGGAACTTGCTCAAATC
TATAGCAAAGCAGAGAGAAGCCCAACAGCAGCAACTCCAGGCACTAATAGCAGAAAAGAAAATGCAGCTTGAAAGGTATC
GGGTTGAATATGAAGCTTTGTGTAAAGTAGAAGCAGAACAAAATGAATTTATTGACCAATTTATTTTTCAGAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 41 .15 RPM
SRP014902_testis 146 .96 RPM
SRP018856_adipose 27 .77 RPM
SRP018288_kidney 33 .79 RPM
SRP018288_lung 17 .11 RPM
SRP018288_liver 102 .98 RPM
SRP018288_heart 14 .22 RPM
SRP035408_liver 36 .72 RPM
SRP035408_brain 39 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005111 ortholog_one2one 2 retrogenes
retro_amel_1011, retro_amel_1337,
Bos taurus ENSBTAG00000008110 ortholog_one2one 1 retrogene
retro_btau_257,
Callithrix jacchus ENSCJAG00000012534 ortholog_one2one 2 retrogenes
retro_cjac_2404, retro_cjac_687,
Cavia porcellus ENSCPOG00000003153 ortholog_one2one 1 retrogene
retro_cpor_152,
Echinops telfairi ENSETEG00000018843 ortholog_one2one 2 retrogenes
retro_etel_1045, retro_etel_1181,
Homo sapiens ENSG00000109083 ortholog_one2one 1 retrogene
retro_hsap_1314,
Gorilla gorilla ENSGGOG00000004568 ortholog_one2one 2 retrogenes
retro_ggor_1026, retro_ggor_1217,
Microcebus murinus ENSMICG00000005074 ortholog_one2one 1 retrogene
retro_mmur_987,
Myotis lucifugus ENSMLUG00000008709 ortholog_one2many 2 retrogenes
retro_mluc_180, retro_mluc_1924,
Macaca mulatta ENSMMUG00000019143 ortholog_one2one 2 retrogenes
retro_mmul_2165, retro_mmul_2234,
Monodelphis domestica ENSMODG00000019233 ortholog_one2one 1 retrogene
retro_mdom_681,
Mustela putorius furo ENSMPUG00000014353 ortholog_one2one 1 retrogene
retro_mputfur_247,
Mus musculus ENSMUSG00000001105 ortholog_one2one 1 retrogene
retro_mmus_3245,
Nomascus leucogenys ENSNLEG00000001883 ortholog_one2one 2 retrogenes
retro_nleu_1067, retro_nleu_1941,
Oryctolagus cuniculus ENSOCUG00000007773 ortholog_one2one 1 retrogene
retro_ocun_438,
Otolemur garnettii ENSOGAG00000003333 ortholog_one2many 2 retrogenes
retro_ogar_1169, retro_ogar_72,
Ochotona princeps ENSOPRG00000005826 ortholog_one2one 6 retrogenes
retro_opri_110, retro_opri_1185, retro_opri_205, retro_opri_293, retro_opri_375, retro_opri_872,
Pongo abelii ENSPPYG00000008087 ortholog_one2one 2 retrogenes
retro_pabe_1097, retro_pabe_1322,
Pan troglodytes ENSPTRG00000008911 ortholog_one2one 1 retrogene
retro_ptro_1079,
Ictidomys tridecemlineatus ENSSTOG00000007554 ortholog_one2one 1 retrogene
retro_itri_713,
Tupaia belangeri ENSTBEG00000005557 ortholog_one2one 2 retrogenes
retro_tbel_180, retro_tbel_1954,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_315 73.12 100.00
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Download FASTA sequences of all ENSSSCG00000023719 retrocopies