Parental gene:

MAP1LC3A, ENSSTOG00000006158

Aliases:None
Description:microtubule-associated protein 1 light chain 3 alpha [Source:HGNC Symbol;Acc:6838]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393371.1:6105168..6106333(-)


>ENSSTOG00000006158
CGCGCGATGCCCTCGGACCGGCCTTTCAAGCAGCGGCGGAGCTTCGCCGACCGCTGTAAGGAGGTGCAGCAGATCCGCGA
CCAGCACCCCAGCAAGATCCCGGTGATCATTGAGCGCTACAAGGGAGAGAAGCAGCTGCCTGTCCTGGACAAGACCAAGT
TCCTGGTCCCAGACCATGTCAACATGAGCGAGTTGGTCAAGATCATCCGGCGCCGCCTGCAGTTGAACCCCACGCAGGCC
TTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCCACACCCATCGCGGACATCTACGAGCAGGAAAAGGATGA
GGATGGATTCCTCTACATGGTCTACGCCTCCCAGGAAACCTTCGGCTTCTGA

Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000012407 ortholog_one2one 1 retrogene
retro_etel_1766,
Felis catus ENSFCAG00000022040 ortholog_one2one 1 retrogene
retro_fcat_1634,
Monodelphis domestica ENSMODG00000002694 ortholog_one2one 1 retrogene
retro_mdom_1256,
Mustela putorius furo ENSMPUG00000017814 ortholog_one2one 1 retrogene
retro_mputfur_1049,
Ictidomys tridecemlineatus ENSSTOG00000002246 within_species_paralog 1 retrogene
retro_itri_391,
Ictidomys tridecemlineatus ENSSTOG00000014826 within_species_paralog 2 retrogenes
retro_itri_1505, retro_itri_662,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_287 58.20 98.37
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2. retro_itri_988 57.94 84.55
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Download FASTA sequences of all ENSSTOG00000006158 retrocopies