RetrogeneDB ID: | retro_mputfur_1049 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897002.1:4745824..4746135(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAP1LC3A | ||
Ensembl ID: | ENSMPUG00000017814 | ||
Aliases: | None | ||
Description: | microtubule-associated protein 1 light chain 3 alpha [Source:HGNC Symbol;Acc:6838] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 59.09 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ADRCKEVQQIRDQHPSKIPVIIER-YKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLL |
AD..KEV..I.DQ.PSKI..I.E...K.EK.LP.LDKTKFL.PDHVN...L.K.I....QLNP..AFFLL | |
Retrocopy | ADHYKEV*HIHDQQPSKILMITEC<LKSEKELPILDKTKFLIPDHVNQC*LIKMIQPCPQLNPM*AFFLL |
Parental | VNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQE |
VN.H.MVSV.TPI.D.Y.QEKDD.GFLYMVY.SQE | |
Retrocopy | VNRHHMVSVPTPILDMYVQEKDDPGFLYMVYTSQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000012407 | 1 retrocopy | |
Felis catus | ENSFCAG00000022040 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002694 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009894 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010473 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000017814 | 1 retrocopy |
retro_mputfur_1049 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000006158 | 2 retrocopies |