RetrogeneDB ID: | retro_itri_988 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393356.1:3594049..3594359(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAP1LC3A | ||
Ensembl ID: | ENSSTOG00000006158 | ||
Aliases: | None | ||
Description: | microtubule-associated protein 1 light chain 3 alpha [Source:HGNC Symbol;Acc:6838] |
Percent Identity: | 57.94 % |
Parental protein coverage: | 84.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RCKEVQQIRDQHPSKIPVIIERYK-GEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVN |
RC.E.....D.....IP.I.E..K.GE.QLP.LDKTKFLV.DH.NM..L..I.RR.LQLN..Q.FFLLVN | |
Retrocopy | RC-EIRPRADSIQIPIPMITEQHK<GERQLPILDKTKFLVFDHINMGKLIRITRRCLQLNVHQGFFLLVN |
Parental | Q-HSMVSVSTPIADIYEQEKDEDG-FLYMVYASQETF |
Q...MVSVS.PI....E.EKDE.G.FL..VY.SQ..F | |
Retrocopy | Q<RNMVSVSLPISKGHESEKDEAGFFLCVVYNSQKMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000012407 | 1 retrocopy | |
Felis catus | ENSFCAG00000022040 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002694 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017814 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002246 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006158 | 2 retrocopies |
retro_itri_287, retro_itri_988 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000014826 | 2 retrocopies |