Parental gene:

RPL12, ENSVPAG00000005123

Aliases:None
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_1560:288413..292032(-)


>ENSVPAG00000005123
ATGCCGCCTAAGTTCGACCCCAACGAGATCAAAGTCGTATACCTGAGGTGCACCGGTGGAGAAGTCGGTGCCACATCTGC
CTTGGCTCCAAAGATCGGTCCTCTGGGTCTGTCTCCAAAAAAAGTTGGTGATGACATTGCCAAGGCGACTGGTGATTGGA
AGGGTCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTGGTACCTTCTGCTTCTGCCCTG
ATCATCAAAGCCCTCAAGGAACCCCCAAGAGACAGAAAGAAGCAGAAAAACATTAAGCACAGTGGAAACATCACTTTTGA
TGAGATTGTCAACATTGCCCGACAGATGAGGCACCGGTCTCTAGCTAGAGAGCTCTCTGGAACCATTAAGGAGATCCTGG
GGACTGCCCAGTCTGTGGGCTGCAATGTTGATGGCCGCCACCCTCACGACATCATAGAGGACATCAACAGTGGTGCGGTG
GAATGCCCAGCGAGTTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006963 possible_ortholog 3 retrogenes
retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus ENSCJAG00000018082 possible_ortholog 1 retrogene
retro_cjac_221,
Latimeria chalumnae ENSLACG00000015373 ortholog_one2one 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta ENSMMUG00000000422 possible_ortholog 2 retrogenes
retro_mmul_1823, retro_mmul_53,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus ENSMUSG00000038900 possible_ortholog 1 retrogene
retro_mmus_28,
Pongo abelii ENSPPYG00000019622 possible_ortholog 44 retrogenes
retro_pabe_1009, retro_pabe_1084, retro_pabe_1095, retro_pabe_1127, retro_pabe_1159, retro_pabe_1223, retro_pabe_1246, retro_pabe_1309, retro_pabe_1361, retro_pabe_1471, retro_pabe_1509, retro_pabe_1577, retro_pabe_1659, retro_pabe_1660, retro_pabe_1736, retro_pabe_1794, retro_pabe_1806, retro_pabe_1820, retro_pabe_1969, retro_pabe_1982, retro_pabe_2000, retro_pabe_2149, retro_pabe_2328, retro_pabe_2531, retro_pabe_2802, retro_pabe_2859, retro_pabe_2928, retro_pabe_2947, retro_pabe_3002, retro_pabe_3146, retro_pabe_3185, retro_pabe_3276, retro_pabe_3363, retro_pabe_3405, retro_pabe_3482, retro_pabe_3693, retro_pabe_488, retro_pabe_521, retro_pabe_604, retro_pabe_620, retro_pabe_757, retro_pabe_815, retro_pabe_831, retro_pabe_904,
Pan troglodytes ENSPTRG00000022808 possible_ortholog 1 retrogene
retro_ptro_21,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_36 75.30 99.39
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2. retro_vpac_37 77.65 51.52
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3. retro_vpac_43 61.96 98.18
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4. retro_vpac_55 71.88 93.94
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5. retro_vpac_80 88.24 50.91
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6. retro_vpac_83 73.21 66.67
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7. retro_vpac_90 80.49 99.39
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8. retro_vpac_158 81.93 100.00
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9. retro_vpac_181 77.33 89.70
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10. retro_vpac_189 78.44 100.00
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11. retro_vpac_191 61.46 57.58
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12. retro_vpac_194 61.00 58.79
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13. retro_vpac_236 76.05 100.00
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14. retro_vpac_268 86.14 100.00
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15. retro_vpac_276 74.51 61.82
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16. retro_vpac_291 78.42 84.24
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17. retro_vpac_306 69.00 60.00
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18. retro_vpac_323 82.14 83.64
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19. retro_vpac_377 83.65 62.42
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20. retro_vpac_413 74.15 87.88
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21. retro_vpac_432 79.17 100.00
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22. retro_vpac_465 82.68 76.36
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23. retro_vpac_482 73.33 53.94
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24. retro_vpac_494 78.57 100.00
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25. retro_vpac_506 84.62 100.00
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26. retro_vpac_569 78.31 100.00
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27. retro_vpac_615 78.22 60.61
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Download FASTA sequences of all ENSVPAG00000005123 retrocopies