RetrogeneDB ID: | retro_vpac_615 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_742:403845..404141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 78.22 % |
Parental protein coverage: | 60.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIG-PLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQA |
MPPKFDPNEIKV.YLRCT.GEVG.TSALAPKI..P.G.SPKKVGDDIAKA.GD.KGLRI.VKLTIQNRQA | |
Retrocopy | MPPKFDPNEIKVIYLRCTCGEVGNTSALAPKIS<PPG-SPKKVGDDIAKAIGD*KGLRISVKLTIQNRQA |
Parental | QIEVVPSASALIIKALKEPPRDRKKQKNIKH |
QI.VVPSASALIIKALK......K.....KH | |
Retrocopy | QIKVVPSASALIIKALKKQKEAEKH*AQWKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |