RetrogeneDB - Parental gene ENSPPYG00000019622 details

                            
>ENSPPYG00000019622
ATGGCGACAAGGGCGTCTCTGGAAGGCTGGGCAGTGACGACAGTTCTCGCGATTGCCGCGTTTTCCGGCCTATATCCGGC

TTGTCTGCGCGGTTTCCGGCCTCTCGGCTTTCGGCTCGGAGGAGGCCAAGGTGCAACTTTCTTCGGTCGTCCCGAATTCC

GGGTTCATCCGACACCAGCCGCCTCCACCATGCCGCCGAAGTTCGACCCCAACGAGATCAAAGTCGTATACCTGAGGTGC

ACCGGAGGTGAAGTCGGTGCCACTTCTGCCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAGGTTGGTGA

TGACATTGCCAAGGCAACAGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGA

TTGAGGTGGTGCCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAAC

ATTAAACACAGTGGGAATATCACTTTTGATGAGATCGTCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAGA

ACTCTCTGGAACCATTAAAGAGATCCTGGGGACTGCCCAGTCTGTGGGCTGTAATGTTGATGGCCGCCACCCTCATGACA

TCATAGATGACATCAATAGTGGTGCTGTGGAATGCCCAGCCAGTTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	80 .56 RPM
SRP007412_cerebellum	46 .21 RPM
SRP007412_heart	94 .65 RPM
SRP007412_kidney	193 .41 RPM
SRP007412_liver	195 .27 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000006963	possible_ortholog	3 retrogenes	retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus	ENSCJAG00000018082	ortholog_many2many	1 retrogene	retro_cjac_221,
Homo sapiens	ENSG00000197958	possible_ortholog	41 retrogenes	retro_hsap_1064, retro_hsap_117, retro_hsap_1210, retro_hsap_127, retro_hsap_1311, retro_hsap_1359, retro_hsap_137, retro_hsap_1401, retro_hsap_1592, retro_hsap_1644, retro_hsap_1790, retro_hsap_1850, retro_hsap_1880, retro_hsap_1895, retro_hsap_2005, retro_hsap_2031, retro_hsap_2099, retro_hsap_2123, retro_hsap_2202, retro_hsap_2311, retro_hsap_2381, retro_hsap_2428, retro_hsap_2436, retro_hsap_2456, retro_hsap_2642, retro_hsap_3388, retro_hsap_3405, retro_hsap_3458, retro_hsap_3544, retro_hsap_3578, retro_hsap_3709, retro_hsap_4107, retro_hsap_4121, retro_hsap_4746, retro_hsap_584, retro_hsap_643, retro_hsap_705, retro_hsap_719, retro_hsap_768, retro_hsap_868, retro_hsap_983,
Gorilla gorilla	ENSGGOG00000000648	possible_ortholog	34 retrogenes	retro_ggor_1024, retro_ggor_1059, retro_ggor_1086, retro_ggor_1207, retro_ggor_1242, retro_ggor_1377, retro_ggor_1389, retro_ggor_1449, retro_ggor_1511, retro_ggor_1516, retro_ggor_1530, retro_ggor_1645, retro_ggor_1740, retro_ggor_1753, retro_ggor_1806, retro_ggor_1845, retro_ggor_2158, retro_ggor_221, retro_ggor_2232, retro_ggor_2293, retro_ggor_2304, retro_ggor_232, retro_ggor_2334, retro_ggor_2394, retro_ggor_2414, retro_ggor_2506, retro_ggor_262, retro_ggor_2758, retro_ggor_2768, retro_ggor_2949, retro_ggor_541, retro_ggor_600, retro_ggor_637, retro_ggor_942,
Latimeria chalumnae	ENSLACG00000015373	ortholog_one2many	3 retrogenes	retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii	ENSMEUG00000007380	possible_ortholog	12 retrogenes	retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta	ENSMMUG00000000422	ortholog_one2one	2 retrogenes	retro_mmul_1823, retro_mmul_53,
Monodelphis domestica	ENSMODG00000004571	possible_ortholog	9 retrogenes	retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus	ENSMUSG00000038900	possible_ortholog	1 retrogene	retro_mmus_28,
Oryctolagus cuniculus	ENSOCUG00000004902	ortholog_one2many	9 retrogenes	retro_ocun_1246, retro_ocun_1632, retro_ocun_1895, retro_ocun_318, retro_ocun_329, retro_ocun_520, retro_ocun_556, retro_ocun_677, retro_ocun_880,
Otolemur garnettii	ENSOGAG00000000597	possible_ortholog	120 retrogenes	retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Ochotona princeps	ENSOPRG00000011078	ortholog_one2many	21 retrogenes	retro_opri_100, retro_opri_1018, retro_opri_1066, retro_opri_1110, retro_opri_1210, retro_opri_1217, retro_opri_221, retro_opri_265, retro_opri_336, retro_opri_353, retro_opri_418, retro_opri_461, retro_opri_479, retro_opri_576, retro_opri_638, retro_opri_648, retro_opri_658, retro_opri_672, retro_opri_835, retro_opri_905, retro_opri_986,
Pan troglodytes	ENSPTRG00000022808	possible_ortholog	1 retrogene	retro_ptro_21,
Pteropus vampyrus	ENSPVAG00000000925	possible_ortholog	15 retrogenes	retro_pvam_100, retro_pvam_1026, retro_pvam_1193, retro_pvam_209, retro_pvam_239, retro_pvam_483, retro_pvam_572, retro_pvam_590, retro_pvam_617, retro_pvam_630, retro_pvam_687, retro_pvam_747, retro_pvam_787, retro_pvam_846, retro_pvam_888,
Rattus norvegicus	ENSRNOG00000016220	possible_ortholog	4 retrogenes	retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii	ENSSHAG00000017864	possible_ortholog	8 retrogenes	retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,
Sus scrofa	ENSSSCG00000005612	possible_ortholog	14 retrogenes	retro_sscr_1111, retro_sscr_127, retro_sscr_189, retro_sscr_28, retro_sscr_439, retro_sscr_526, retro_sscr_551, retro_sscr_71, retro_sscr_715, retro_sscr_772, retro_sscr_773, retro_sscr_828, retro_sscr_832, retro_sscr_911,
Vicugna pacos	ENSVPAG00000005123	possible_ortholog	27 retrogenes	retro_vpac_158, retro_vpac_181, retro_vpac_189, retro_vpac_191, retro_vpac_194, retro_vpac_236, retro_vpac_268, retro_vpac_276, retro_vpac_291, retro_vpac_306, retro_vpac_323, retro_vpac_36, retro_vpac_37, retro_vpac_377, retro_vpac_413, retro_vpac_43, retro_vpac_432, retro_vpac_465, retro_vpac_482, retro_vpac_494, retro_vpac_506, retro_vpac_55, retro_vpac_569, retro_vpac_615, retro_vpac_80, retro_vpac_83, retro_vpac_90,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_488	80.54	64.04	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_521	82.20	51.75	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_604	85.20	85.09	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_620	79.64	72.37	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_757	77.44	84.21	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_815	96.00	87.28	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_831	86.29	85.09	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pabe_904	97.44	85.09	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_pabe_1009	59.17	52.19	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_pabe_1084	59.17	52.19	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_pabe_1095	75.19	56.58	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_pabe_1127	71.51	74.12	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_pabe_1159	95.71	71.05	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_pabe_1223	94.03	87.72	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_pabe_1246	96.92	85.09	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_pabe_1309	91.28	85.09	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_pabe_1361	63.04	78.95	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_pabe_1471	71.04	77.63	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_pabe_1509	92.78	84.65	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_pabe_1577	61.42	83.33	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_pabe_1659	91.72	73.68	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_pabe_1660	78.67	64.91	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_pabe_1736	89.47	82.46	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_pabe_1794	97.45	85.09	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_pabe_1806	93.25	70.61	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_pabe_1820	61.68	71.05	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_pabe_1969	97.99	65.35	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_pabe_1982	75.38	84.21	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_pabe_2000	83.20	53.51	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_pabe_2149	86.15	84.65	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_pabe_2328	71.11	57.89	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_pabe_2531	93.40	85.96	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_pabe_2802	62.10	53.51	Please wait, loading	Please wait, loading	Please wait, loading
34.	retro_pabe_2859	87.56	87.28	Please wait, loading	Please wait, loading	Please wait, loading
35.	retro_pabe_2928	68.46	56.14	Please wait, loading	Please wait, loading	Please wait, loading
36.	retro_pabe_2947	92.86	85.09	Please wait, loading	Please wait, loading	Please wait, loading
37.	retro_pabe_3002	94.97	86.84	Please wait, loading	Please wait, loading	Please wait, loading
38.	retro_pabe_3146	86.98	73.68	Please wait, loading	Please wait, loading	Please wait, loading
39.	retro_pabe_3185	94.36	85.09	Please wait, loading	Please wait, loading	Please wait, loading
40.	retro_pabe_3276	96.45	85.96	Please wait, loading	Please wait, loading	Please wait, loading
41.	retro_pabe_3363	60.85	81.58	Please wait, loading	Please wait, loading	Please wait, loading
42.	retro_pabe_3405	98.09	68.86	Please wait, loading	Please wait, loading	Please wait, loading
43.	retro_pabe_3482	62.71	51.32	Please wait, loading	Please wait, loading	Please wait, loading
44.	retro_pabe_3693	71.29	85.53	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000019622 retrocopies

Parental gene:	ENSPPYG00000019622
Aliases:	None
Description:	None
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	9:124352003..124360327(-)

Parental gene:

ENSPPYG00000019622