RetrogeneDB ID: | retro_vpac_80 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1613:551831..552082(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 50.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IKALKEP-PRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHD |
IKALKEP.PRDRKKQKN.KHSGNITFDEIVN.ARQMRH.SLARELSGTIKE.LGTAQS.GCNV.GRHPHD | |
Retrocopy | IKALKEP<PRDRKKQKNTKHSGNITFDEIVNTARQMRHWSLARELSGTIKEVLGTAQSEGCNVGGRHPHD |
Parental | IIEDINSGAVECPAS |
IIE.IN.GA.ECPAS | |
Retrocopy | IIENINGGAEECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |