Parental gene: | POPTR_0001s06560 |
| Aliases: | None |
| Description: | None |
| Organism: | Western balsam poplar (Populus trichocarpa) |
| Coordinates: | 1:5049249..5051819(+) |
>POPTR_0001s06560
ATGAAAGCCTACCTCTTCTCCCTAGCTTTCCTATTCTTGTCCCTGGTCCAAGGGCTAAACACCAGAGGCCAAGGCACAAC
CGTCAAAGTCTTCCATGTCTACAGCCCACAGTCCCCATTTAGGCCCTCAAAGCCAGTATCATGGGAAGACAGTGTGCTCC
AAATGCTGGCCGAAGATCAAGCTAGGCTTCAGTTTTTGTCAAGCTTAGTGGGCAGAAAATCCTGGGTGCCAATTGCTTCA
GGCAGACAGATTGTGCAGAGCCCAACTTACATTGTTAAGGCAAATGTTGGAACCCCAGCTCAGACATTTCTCATGGCTTT
GGATACCAGCAATGATGCTGCTTGGATTCCTTGCAATGGCTGTGTTGGGTGTTCCTCTACTGTGTTCAACTCTGTTACGT
CCACAACCTTCAAAACCCTCGGTTGTGATGCTCCTCAATGCAAGCAGGTACCAAACCCCACTTGCGGTGGCAGCACATGC
ACATGGAACACTACCTATGGCGGCTCCACCATTTTATCAAACCTCACACGGGACACAATTGCTCTATCTACTGACATTGT
CCCTGGCTACACTTTTGGTTGCATCCAAAAAACCACAGGGAGCTCAGTGCCTCCTCAAGGACTTTTGGGCTTGGGGAGAG
GTCCGTTGTCATTTTTGTCTCAAACCCAAGACCTATACAAATCCACATTCTCATACTGCTTGCCTAGCTTTAGGACTCTC
AACTTTTCTGGGACATTGAGGCTTGGACCAGCTGGTCAGCCCCTGAGGATCAAGACCACACCACTGCTCAAGAACCCAAG
GAGATCATCATTATACTATGTGAACTTGATTGGAATTAGAGTTGGTAGGAAGATTGTTGATATTCCTGCTAGTGCTCTGG
CATTCAATCCAACAACTGGTGCTGGGACCATCTTTGATTCAGGCACTGTTTTCACCAGATTAGTTGCCCCAGTTTACACC
GCGGTCCGTGATGAGTTCAGGAAGCGGGTTGGCAATGCAATCGTGTCATCTCTAGGTGGGTTCGACACATGTTACACAGG
ACCAATCGTCGCACCCACCATGACATTCATGTTCTCAGGCATGAACGTAACATTGCCACCAGACAACCTACTAATCCGCA
GCACTGCCGGTAGCACCTCTTGCTTGGCCATGGCTGCAGCCCCTGATAATGTGAATTCTGTGCTGAACGTGATAGCCAAC
ATGCAGCAACAAAACCATAGGATTCTTTTTGATGTGCCCAATTCAAGGATTGGTGTGGCTCGTGAGCCATGTTCTTGA
ATGAAAGCCTACCTCTTCTCCCTAGCTTTCCTATTCTTGTCCCTGGTCCAAGGGCTAAACACCAGAGGCCAAGGCACAAC
CGTCAAAGTCTTCCATGTCTACAGCCCACAGTCCCCATTTAGGCCCTCAAAGCCAGTATCATGGGAAGACAGTGTGCTCC
AAATGCTGGCCGAAGATCAAGCTAGGCTTCAGTTTTTGTCAAGCTTAGTGGGCAGAAAATCCTGGGTGCCAATTGCTTCA
GGCAGACAGATTGTGCAGAGCCCAACTTACATTGTTAAGGCAAATGTTGGAACCCCAGCTCAGACATTTCTCATGGCTTT
GGATACCAGCAATGATGCTGCTTGGATTCCTTGCAATGGCTGTGTTGGGTGTTCCTCTACTGTGTTCAACTCTGTTACGT
CCACAACCTTCAAAACCCTCGGTTGTGATGCTCCTCAATGCAAGCAGGTACCAAACCCCACTTGCGGTGGCAGCACATGC
ACATGGAACACTACCTATGGCGGCTCCACCATTTTATCAAACCTCACACGGGACACAATTGCTCTATCTACTGACATTGT
CCCTGGCTACACTTTTGGTTGCATCCAAAAAACCACAGGGAGCTCAGTGCCTCCTCAAGGACTTTTGGGCTTGGGGAGAG
GTCCGTTGTCATTTTTGTCTCAAACCCAAGACCTATACAAATCCACATTCTCATACTGCTTGCCTAGCTTTAGGACTCTC
AACTTTTCTGGGACATTGAGGCTTGGACCAGCTGGTCAGCCCCTGAGGATCAAGACCACACCACTGCTCAAGAACCCAAG
GAGATCATCATTATACTATGTGAACTTGATTGGAATTAGAGTTGGTAGGAAGATTGTTGATATTCCTGCTAGTGCTCTGG
CATTCAATCCAACAACTGGTGCTGGGACCATCTTTGATTCAGGCACTGTTTTCACCAGATTAGTTGCCCCAGTTTACACC
GCGGTCCGTGATGAGTTCAGGAAGCGGGTTGGCAATGCAATCGTGTCATCTCTAGGTGGGTTCGACACATGTTACACAGG
ACCAATCGTCGCACCCACCATGACATTCATGTTCTCAGGCATGAACGTAACATTGCCACCAGACAACCTACTAATCCGCA
GCACTGCCGGTAGCACCTCTTGCTTGGCCATGGCTGCAGCCCCTGATAATGTGAATTCTGTGCTGAACGTGATAGCCAAC
ATGCAGCAACAAAACCATAGGATTCTTTTTGATGTGCCCAATTCAAGGATTGGTGTGGCTCGTGAGCCATGTTCTTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brassica oleracea | Bo8g083640 | ortholog_many2many | 1 retrogene | |
| Brassica rapa | Bra014819 | ortholog_many2many | 1 retrogene | |
| Medicago truncatula | MTR_8g039540 | ortholog_many2many | 1 retrogene | |
| Prunus persica | PRUPE_ppa005966mg | ortholog_one2many | 1 retrogene | |
| Theobroma cacao | TCM_045111 | ortholog_one2many | 1 retrogene | |
| Vitis vinifera | VIT_13s0084g00820 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptri_13 | 54.08 | 99.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all POPTR_0001s06560 retrocopies