RetrogeneDB ID: | retro_pper_11 | ||
Retrocopylocation | Organism: | Peach (Prunus persica) | |
Coordinates: | scaffold_1:46502418..46503750(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | PRUPE_ppa005789mg | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | PRUPE_ppa005966mg | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.21 % |
Parental protein coverage: | 98.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FVAFSLCLLFFSIAQGLSNNPQCSEAKDQGSNLQVFHVYSPCSPFRPTKPMSWEESVLQMQAKDQARLQF |
F..F....L..S....L.....C....D....L.....YS.CSPF.P.K..SW...VL.M..KD.AR... | |
Retrocopy | FFFFFFFALLISVTKALD---PCASQSDGSHDLSIIPTYSKCSPFSPPKADSWVTTVLNMASKDPARINY |
Parental | LSSLVARKSV-VPIASGRQIIQSPTYIVRAKIGTPPQTLLMAVDTSNDAAWVPCNGCVGCGSNVFNSAKS |
LS.LVA.K....PIASG.Q......Y.VR.K.GTP.Q...M..DTSND.AW.PC.GC.GC....F....S | |
Retrocopy | LSTLVAQKTTSAPIASGQQVLNIANYVVRLKLGTPGQLMFMVLDTSNDIAWAPCSGCTGCSATTFLTNSS |
Parental | TTYKTLGCQTAQCKQVPNPTC--LGST----CSFNTSYGS-STLAANLSQETFTLATDAVPGYTFGCLQK |
TTY..L.C....C.Q.....C...GST....C.FN.SYG..S...A.L.Q....L..D..P...FGC... | |
Retrocopy | TTYRSLDCSVHECAQARGLSCPATGSTGANGCFFNQSYGGDSSFSATLVQDALILGNDVLPKFSFGCINS |
Parental | TTGSSVPPQGLLGLGRGPLSLLSQTQNLYQSTFSYCLPSFKSLNFSGSLRLGPVGQPIRIKYTPLLKNPR |
..G.SVP.QGLLGLGRG..SLLSQ...LY...FSYCLPSFKS..FSGSL.LGP.GQP..I..TPLL.NP. | |
Retrocopy | ISGGSVPSQGLLGLGRGSMSLLSQSGSLYSGVFSYCLPSFKSYYFSGSLKLGPAGQPKSIRTTPLLRNPH |
Parental | RSSLYYVNLNAIRVGRRIVDIPPAALAFNPTTGAGTIIDSGTVFTRLVEPAYVAVRNEFRRRVGKYPFQT |
R.SLYYVNL..I.VGR..V.I.P..LAFNP.TGAGTIIDSGTV.TR.V.P.Y.A.R.EFR..V.K..F.. | |
Retrocopy | RPSLYYVNLTGITVGRVPVPIAPELLAFNPNTGAGTIIDSGTVITRFVQPVYTALRDEFRKQV-KGTFSS |
Parental | LGGFDTCYSV--PFVVPTITFMFSGMNVTLPEDNIVIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQN |
LG.FDTC.......V.PTITF.F.G...TLP..N..IHS..GS..CLAMAAAP.NVNSVLNVIAN.QQQN | |
Retrocopy | LGAFDTCFAATNEAVAPTITFQFTGLKLTLPLENSLIHSSSGSVACLAMAAAPNNVNSVLNVIANLQQQN |
Parental | HRVLIDVPNSRLGVARERC |
.R.L.DV.NS..G.ARE.C | |
Retrocopy | LRILFDVANSVVGIARENC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica oleracea | Bo8g083640 | 1 retrocopy | |
Brassica rapa | Bra014819 | 1 retrocopy | |
Medicago truncatula | MTR_8g039540 | 1 retrocopy | |
Populus trichocarpa | POPTR_0001s06560 | 1 retrocopy | |
Prunus persica | PRUPE_ppa005966mg | 1 retrocopy |
retro_pper_11 ,
|
Theobroma cacao | TCM_045111 | 1 retrocopy | |
Vitis vinifera | VIT_13s0084g00820 | 1 retrocopy |