RetrogeneDB ID: | retro_bole_10 | ||
Retrocopylocation | Organism: | Brassica oleracea | |
Coordinates: | C8:19049531..19050887(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bo8g058840 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bo8g083640 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.92 % |
Parental protein coverage: | 71.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SACVGCASSVLFDPSKSSSSRTVQCEASQC-KQAPNPTCTVSKSCGFNMTYGG-STITASLTQDTLTLAN |
.AC....SS........S.....Q.....C....P.P..T....C.FN..YGG.S...ASL.QDTLTLA. | |
Retrocopy | AACFNPNSSSTYSTVSCSAAECTQARGLTCPSSSPSPPST----CSFNQSYGGGSSFSASLVQDTLTLAS |
Parental | DAIPGYTFGCINKATGTSLPAQGLMGLGRGPLSLISQTQNLYKSTFSYCLPNSKSSSFSGTLRLGPKFQP |
D.I....FGCIN.A.G.SLP.QGLMGLGRGP.SLISQT..LY...FSYCLP...S..FSG.L.LGP..QP | |
Retrocopy | DVISNFSFGCINSASGNSLPPQGLMGLGRGPTSLISQTTSLYSGVFSYCLPSFRSFYFSGSLKLGPMGQP |
Parental | VRIKTTPLLKNPRRSSLYYVNMVGIRVGNKIVDIPPSALAFNPATGAGTIFDSGTVYTRLVEPAYVAVRN |
..I..TPLL....R.SLYYVN..G..VG...V...P..L.F....GAGTI.DSGTV.TR.V.P.Y.A.R. | |
Retrocopy | RSIRYTPLLRSAHRPSLYYVNLTGVSVGPTQVPVDPTYLTFDSNSGAGTIIDSGTVITRFVQPVYEAIRD |
Parental | EFRRRVKNANATSLGGFDTCYS--GSVVFPSVTFMFAGMNVTLPPDNLLIHSSSGSTSCLAMAAAPNNVN |
EFR..VK....T.LG.FDTC.........P.VT.........LP..N.LIHSS.G...CL.MA..P.N.N | |
Retrocopy | EFRSQVKGPFST-LGAFDTCFAADSDSLAPKVTLHMTSLDLKLPVENTLIHSSAGTLACLSMAGIPLNAN |
Parental | SVLNVIASMQQQNHRVLIDLPNSRLGISRETC |
.VLNVIA..QQQN.R.L.D.PNSRLGI..E.C | |
Retrocopy | AVLNVIANLQQQNLRILFDVPNSRLGIATEAC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica oleracea | Bo8g083640 | 1 retrocopy |
retro_bole_10 ,
|
Medicago truncatula | MTR_8g039540 | 1 retrocopy | |
Populus trichocarpa | POPTR_0001s06560 | 1 retrocopy | |
Prunus persica | PRUPE_ppa005966mg | 1 retrocopy | |
Theobroma cacao | TCM_045111 | 1 retrocopy | |
Vitis vinifera | VIT_13s0084g00820 | 1 retrocopy |