RetrogeneDB ID: | retro_acar_180 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343341.1:277381..277900(+) | ||
Located in intron of: | ENSACAG00000004273 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MPV17L2 | ||
Ensembl ID: | ENSACAG00000027644 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.57 % |
Parental protein coverage: | 87. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FWRPLFRGRLLLLTNTLSCGGLLAAGDTLRQAWERRKRSGRQVSLLSAARMFAIGCSMGPLMHYWYLWLD |
F..PLF.GR.L..TNT.SCG.LL...D...Q..ERR..............MF..GCSMGP..HYWYL.LD | |
Retrocopy | FYTPLFGGRNLIITNTVSCGVLLGTADIIQQSLERRRNPALKWDADRMIHMFITGCSMGPPLHYWYLLLD |
Parental | GAFPAAGLSGIRTVLKKVFIDQIVASPALGVWYFLGMGTLEGQALERSWQELEDNFWEFYKMDWCVWPPA |
...P..G......V..KV.IDQ..A.P..G.WYF..MG.L.G..L..S..E....FWE.......VWP.A | |
Retrocopy | KITPGKGMQHVKIVVLKVTIDQAFA-PFFGCWYFTWMGLLQGHSLADSLKEFKEKFWEYFIAELTVWPAA |
Parental | QLVNFLFLPPKYRVVYMNVITLGWDTYLSYLKHR |
QLVNF.FL.PKYRV...N..TLGW..YLSYLKHR | |
Retrocopy | QLVNFFFLQPKYRVIFVNMVTLGWNVYLSYLKHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .13 RPM | 7 .61 RPM |
SRP009831_brain | 0 .19 RPM | 6 .58 RPM |
SRP009831_dewlap | 0 .00 RPM | 9 .75 RPM |
SRP009831_embryo | 0 .00 RPM | 12 .54 RPM |
SRP009831_heart | 0 .21 RPM | 5 .71 RPM |
SRP009831_liver | 0 .04 RPM | 22 .09 RPM |
SRP009831_lung | 0 .00 RPM | 8 .61 RPM |
SRP009831_ovary | 0 .00 RPM | 10 .15 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 9 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000027644 | 1 retrocopy |
retro_acar_180 ,
|
Bos taurus | ENSBTAG00000025788 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014104 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016379 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005025 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005944 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002028 | 1 retrocopy |