RetrogeneDB ID: retro_nleu_2666

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397393.1:287782..288048(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MPV17L2
• Ensembl ID: ENSNLEG00000005944
• Aliases: None
• Description: MPV17 mitochondrial membrane protein-like 2 [Source:HGNC Symbol;Acc:28177]

Sequence

>retro_nleu_2666
GAGCTGCCAGGAGCTGCAGGACAAGTTCTGGGAATTCTACAAGGCTGACTGGTGCATGTGGCCGGCTGCACGCTGGCGAA
CTTTCCCTTTGTGCACCCCCCTCCTCCCAGTTCTGAGTCACCTACATCAGTGGCCTGACATTGGGCTGGGACACATATCT
GTCCTACCTGAAGTACCAGTTCCTCTAACACCCCAGGCTATATGGCCTGGGCACCTGAGCAGACTAAGCTGCCCGCCCCC
AGGGACAAGATGCAAGACTGACTCCC

Alignment

ORF - retro_nleu_2666 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.52 %
• Parental protein coverage: 61.81 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ELPGAAGEVLGILQGRLVRVACCAV-RELPLRAP--PISSHLHQRPDAGLGHVPVLLEVPEPSSSDTPRL
          ELPGAAG.VLGILQG.LV.VA.C...R..PL..P..P..SHLHQ.PD.GLGH..VL.EVP.P....TP..
Retrocopy ELPGAAGQVLGILQG*LVHVAGCTL>RTFPLCTPLLPVLSHLHQWPDIGLGHISVLPEVPVPL---TPQA

Parental  CGPGHPSRLNCPPP-GPDARLTP
          ..PGH.SRL.CPPP.G.DARLTP
Retrocopy IWPGHLSRLSCPPP>GQDARLTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2666 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000027644	1 retrocopy	retro_acar_180,
Bos taurus	ENSBTAG00000025788	1 retrocopy	retro_btau_306,
Callithrix jacchus	ENSCJAG00000014104	1 retrocopy	retro_cjac_4063,
Echinops telfairi	ENSETEG00000013840	1 retrocopy	retro_etel_1446,
Macropus eugenii	ENSMEUG00000016379	2 retrocopies	retro_meug_223, retro_meug_943,
Macaca mulatta	ENSMMUG00000005025	1 retrocopy	retro_mmul_2493,
Nomascus leucogenys	ENSNLEG00000005944	1 retrocopy	retro_nleu_2666 ,
Pteropus vampyrus	ENSPVAG00000002028	1 retrocopy	retro_pvam_1254,