RetrogeneDB ID: | retro_btau_306 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:96220623..96221277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MPV17L2 | ||
Ensembl ID: | ENSBTAG00000025788 | ||
Aliases: | None | ||
Description: | Mpv17-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A5D787] |
Percent Identity: | 97.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPPGGWRWLRGLWAAGQPLFQGRALLVTNTLGCGVLMAAGDGARQTWEIRARPGQKFDPRRSVSMFAVGC |
MPPGGWRWLRGLWAAGQPLFQGRALLVTNTLGCGVLMAAGDGA.QTWEI.ARPGQKFDPRRSVSMFAVGC | |
Retrocopy | MPPGGWRWLRGLWAAGQPLFQGRALLVTNTLGCGVLMAAGDGACQTWEIHARPGQKFDPRRSVSMFAVGC |
Parental | SMGPFLHYWYLWLDRLFPASGFPGLPNVLKKVLIDQLVASPMLGVWYFLGLGCLEGQTLDKSCQELRDKF |
SMGPFLHYWYLWLDRLFPASGFPGLPNVLKKVLIDQLVASPMLGVWYFLGLGCLEGQTLDKSCQELRDKF | |
Retrocopy | SMGPFLHYWYLWLDRLFPASGFPGLPNVLKKVLIDQLVASPMLGVWYFLGLGCLEGQTLDKSCQELRDKF |
Parental | WEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRIPGPLTPPGCVALGTIQTEPPD |
WEFYKADWCVWPAAQLVNFLFVPPQF..TYI.GLTLGWDTYLSYLKYRIPGPLTPPGCVALGTIQTEPPD | |
Retrocopy | WEFYKADWCVWPAAQLVNFLFVPPQF*ITYISGLTLGWDTYLSYLKYRIPGPLTPPGCVALGTIQTEPPD |
Parental | ARQQGKTD |
ARQQGKTD | |
Retrocopy | ARQQGKTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 1 .59 RPM |
ERP005899_muscle | 0 .21 RPM | 25 .34 RPM |
SRP017611_brain | 0 .05 RPM | 4 .98 RPM |
SRP017611_kidney | 0 .06 RPM | 10 .25 RPM |
SRP017611_liver | 0 .23 RPM | 10 .95 RPM |
SRP030211_testis | 0 .06 RPM | 4 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000027644 | 1 retrocopy | |
Bos taurus | ENSBTAG00000025788 | 1 retrocopy |
retro_btau_306 ,
|
Callithrix jacchus | ENSCJAG00000014104 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016379 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005025 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005944 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002028 | 1 retrocopy |