RetrogeneDB ID: | retro_etel_1446 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_267283:2047..2632(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004005 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MPV17L2 | ||
Ensembl ID: | ENSETEG00000013840 | ||
Aliases: | None | ||
Description: | MPV17 mitochondrial membrane protein-like 2 [Source:HGNC Symbol;Acc:28177] |
Percent Identity: | 74.62 % |
Parental protein coverage: | 96.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MVSGRWHWVRGLWAAGKP-LFQGRALLVTNTLGC-GALMAAGDGARQTWEIRARPGQRFNPLRSASMFAM |
M.SG.W.WVR.L.A..KP.LFQ..ALLVTNTLGC.G..MAAGD.A.Q..EIR.R.GQRF...R.AS.FAM | |
Retrocopy | MASGGWRWVRRLCAVEKP>LFQDPALLVTNTLGC>GTFMAAGDSACQSCEIRSRSGQRFHLWRFASIFAM |
Parental | GCSMGPFLHYWYLWLDRLLPASGLRSLPSVLRKVLVDQLVASPLLGVWYFLGLGWLEGQTLEESHQELRD |
GCS.G.FLHY.YLWLDRLLPA.GLRSLP.VLRKVLV...VAS.LLGVWYFLGLGWLEGQTL.ESHQELRD | |
Retrocopy | GCSVGLFLHYPYLWLDRLLPAPGLRSLPTVLRKVLVGPRVASSLLGVWYFLGLGWLEGQTLDESHQELRD |
Parental | KFWEFYKADWCVWPPAQLVNFLFVPSQFRVTYIN-GVTLGWDTYLSYLKYRGPPPGC |
KFWEFYKADWC.W.PA.LVNFLF..SQFRV.YIN.G.TLGW.T.LS.LKY.G....C | |
Retrocopy | KFWEFYKADWCAWLPAHLVNFLFILSQFRVIYIN>GSTLGWGT*LSHLKYWGASRDC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000027644 | 1 retrocopy | |
Bos taurus | ENSBTAG00000025788 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014104 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013840 | 1 retrocopy |
retro_etel_1446 ,
|
Macropus eugenii | ENSMEUG00000016379 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005025 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005944 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002028 | 1 retrocopy |