RetrogeneDB ID:

retro_acar_37

Retrocopy
location
Organism:Anole lizard (Anolis carolinensis)
Coordinates:2:154785915..154786665(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSACAG00000007122
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSACAG00000013688
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_acar_37
TCCGCCATGGCTTCCCTCCTCAAAGTGACCCCGGAGGTTAAGATGGCGGTAGACTCTTTCAGGGAGCGAATCACAGGAGA
AGCCGAAGAGCTCGTCGCGCATTTTTTCCCGAAGAAGTTTTTAGAACTGGATGCTTTCCTTCAGGATCCGACTCTGAACT
TTCGCGATCTCAGCCAAATCCACTCAGATGTGAGCTACCCTGTTCCCATCCTGCTGGGGCCAAACAGCCCTGCAGGGCCC
AGTCTGAAAAAGAGGAAACTGGAAGGCAACTTGCAAGGCACCAGAGTCCTTGTGGTGCCTCAAGGGATGCCGAAGAGCAA
CCAGAAGCTGGTGGACATCCTGGAGAAGGTGAAACCCGAGATACGGCTGCTGATGGAGAAGTGCAACGTGGTCAAACTGT
GGGTGCAGCTCTCCATTCCCAAGATAGAAGGCGGCAACAGCTTTGGGGTTTCTGTTCAGGAGGACACTGTGGCTGAGCTC
CAAACTGTGGAGAGCGAGGCAGCGCTGCACCTGGACGAGATCGCGAGATACTACACCGCGCGGGCAAAGCTGGTTTCCAA
AATAGCTAAATACCCTCACGTGGAGGACTACCGTCGCACAGTAACCGAGATGGACGAAAAGGGATATATCTGTCTGAGGC
TCCTCATTTTGGAGCTGAGAAATCAATACGTGCTTCTCCATGACATGATCCTAAAGAATATTGAGAAAATCAAGCAGCCC
CAGAGCAGTGAGGTAGAGGCTCTCTACTGA

ORF - retro_acar_37 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.8 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASLLKVDPEVKIKVDSFRERITGEAEDLVANFFPKKLLELDAFLKDPILNIHDLTQIHSDMNLPVPDPI
MASLLKV.PEVK..VDSFRERITGEAE.LVA.FFPKK.LELDAFL.DP.LN..DL.QIHSD...PV..PI
RetrocopyMASLLKVTPEVKMAVDSFRERITGEAEELVAHFFPKKFLELDAFLQDPTLNFRDLSQIHSDVSYPV--PI
ParentalLLTNSHDGLDGPNLKKRKLEECEETFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWV
LL........GP.LKKRKL...E...QGT.V.V.P.GM.KSNQ.LVDI.EKVKPEIRLL.EKCN.VK.WV
RetrocopyLLGPNSPA--GPSLKKRKL---EGNLQGTRVLVVPQGMPKSNQKLVDILEKVKPEIRLLMEKCNVVKLWV
ParentalQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEMD
QL.IP.IE.GN.FGVS.QE.TVAEL.TVESEAA..LD.I.RYY..RAKLVSKIAKYPHVEDYRRTVTEMD
RetrocopyQLSIPKIEGGNSFGVSVQEDTVAELQTVESEAALHLDEIARYYTARAKLVSKIAKYPHVEDYRRTVTEMD
ParentalEKEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRSSNAETLY
EK.YI.LRL.I.ELRNQYV.LHDMILKNIEKIK.P.SS..E.LY
RetrocopyEKGYICLRLLILELRNQYVLLHDMILKNIEKIKQPQSSEVEALY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP009831_adrenal 0 .92 RPM 19 .89 RPM
SRP009831_brain 0 .90 RPM 18 .32 RPM
SRP009831_dewlap 0 .67 RPM 39 .95 RPM
SRP009831_embryo 1 .04 RPM 69 .86 RPM
SRP009831_heart 2 .49 RPM 24 .80 RPM
SRP009831_liver 1 .27 RPM 19 .76 RPM
SRP009831_lung 1 .51 RPM 16 .93 RPM
SRP009831_ovary 0 .97 RPM 46 .06 RPM
SRP009831_skeletal_muscle 0 .66 RPM 34 .75 RPM
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_37 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_37 was not experimentally validated.

Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG00000013688 2 retrocopies
retro_acar_118, retro_acar_37 ,
Bos taurus ENSBTAG000000199182 retrocopies
Callithrix jacchus ENSCJAG000000131111 retrocopy
Cavia porcellus ENSCPOG000000125521 retrocopy
Equus caballus ENSECAG000000126202 retrocopies
Homo sapiens ENSG000001314671 retrocopy
Loxodonta africana ENSLAFG000000134461 retrocopy
Mustela putorius furoENSMPUG000000100271 retrocopy
Oryctolagus cuniculus ENSOCUG000000159861 retrocopy
Pongo abelii ENSPPYG000000083721 retrocopy
Pan troglodytes ENSPTRG000000092251 retrocopy
Sus scrofa ENSSSCG000000173851 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000288331 retrocopy



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