RetrogeneDB ID: | retro_acar_52 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343907.1:39114..40443(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000003836 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUCLA2 | ||
Ensembl ID: | ENSACAG00000014610 | ||
Aliases: | None | ||
Description: | succinate-CoA ligase, ADP-forming, beta subunit [Source:HGNC Symbol;Acc:11448] |
Percent Identity: | 74.89 % |
Parental protein coverage: | 88.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SLAAKILSGSPGLLSNHAFQI--EQRRNLSLHEYLSMELLKEAGISVPHGLVANTPEDAYNVAKQIGTKD |
S..AK.L..S.G............Q.R.LSLHEYLSM.LLKE.GI.VP.GL.A.TPE.AY.VA..IGT.D | |
Retrocopy | SATAKALGSSRGFVTTCRRPVLQQQLRDLSLHEYLSMKLLKEEGIPVPYGLLARTPEEAYTVARKIGTDD |
Parental | LVVKAQVLAGGRGKGTFEGGLKGGVKIVFSPEEAREISSRMIGKKLFTKQTGEKGRICNQVFICERRYPR |
LVVKAQVL.GGR..G.FEGGL.GGV..V.SPEEARE..SRMIGK.LFT.QTG..GRICNQV.ICER.Y.R | |
Retrocopy | LVVKAQVLTGGRQNGVFEGGLRGGVQVVCSPEEAREVASRMIGKRLFTQQTGKMGRICNQVLICERKYLR |
Parental | REYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPDAIAKEPVDIVEGIQKEQAIRLAKKMGFPANLVN |
REYYFAITMER.FQGPVLIGS.QGGV.IEDVAAENP.AI.K.PVDI.EGI..EQA..LA.KMGFP..L.. | |
Retrocopy | REYYFAITMERAFQGPVLIGSSQGGVRIEDVAAENPGAIIKQPVDIMEGITEEQAVQLAQKMGFPHHLLY |
Parental | EAAENMIKIYNLFIKFDATMVEINPMVEDSTGIVMCMDAKINFDSNSAYRQQKIFSLQDWTQEDDRDRDA |
E.A.NMIKIYN.FIK.D....EINP.VEDSTG.VMCMDAKI.FDSNSA.RQQKIF.LQDWTQ.D.RDR.A | |
Retrocopy | EVADNMIKIYNFFIKYDVILLEINPLVEDSTGHVMCMDAKIIFDSNSAFRQQKIFELQDWTQLDERDREA |
Parental | AKSDLNYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATAQRVTEAFRLITSDKKVQAIL |
A...LNYI.LDG.IGCLVNGAGLAMATMDIIKLHGGTPAN.L.VGG.AT...VTEAF.LITS..KVQAIL | |
Retrocopy | ANAELNYIALDGNIGCLVNGAGLAMATMDIIKLHGGTPANYLNVGGSATVEQVTEAFKLITSNEKVQAIL |
Parental | VNIFGGIMRCDVIAQGIIMAVKDLELKIPIVVRLQGTRVDDAKALITDSGLKILACDDLDEAAKMVVKLS |
VNIFGG.MRCDVIA.GIIM..KDL.LKIPIVVRLQGTRV.DAK.LI..SGLKIL.CDDLD.AAKM.VKLS | |
Retrocopy | VNIFGGLMRCDVIAHGIIMSAKDLDLKIPIVVRLQGTRVKDAKNLIAESGLKILPCDDLDQAAKMAVKLS |
Parental | EIVTLAKQAQVDVKFQLP |
EI..LAK.AQVDVKF.LP | |
Retrocopy | EIMVLAKEAQVDVKFHLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .62 RPM | 84 .75 RPM |
SRP009831_brain | 0 .76 RPM | 130 .52 RPM |
SRP009831_dewlap | 0 .00 RPM | 27 .59 RPM |
SRP009831_embryo | 0 .59 RPM | 98 .07 RPM |
SRP009831_heart | 1 .19 RPM | 217 .02 RPM |
SRP009831_liver | 0 .08 RPM | 55 .10 RPM |
SRP009831_lung | 0 .05 RPM | 58 .18 RPM |
SRP009831_ovary | 0 .00 RPM | 15 .67 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 127 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014610 | 2 retrocopies |
retro_acar_26, retro_acar_52 ,
|
Callithrix jacchus | ENSCJAG00000009278 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000014961 | 1 retrocopy | |
Homo sapiens | ENSG00000136143 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008224 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000007539 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001488 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002948 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007452 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005352 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005859 | 3 retrocopies |