RetrogeneDB ID: | retro_ggor_1694 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:77460021..77461138(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUCLA2 | ||
Ensembl ID: | ENSGGOG00000008224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.71 % |
Parental protein coverage: | 79.87 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | EGTGSDSEMAASMFYGRLVAVAILRSHRPRTAQRAAAQVLGSSGLFNNHGLQVQQQQQRNLSLHEYMSME |
EGTGSD..M.A.MFY....A.A...SH...T.....AQVLG.S.LFNN..LQVQQQQQ.NLSLHEYM.M. | |
Retrocopy | EGTGSDLGMVAFMFYS*QLA-ATFHSHQSQTIVQSTAQVLGISELFNNQ*LQVQQQQQKNLSLHEYMNMK |
Parental | LLQEAGVSVPK-GYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAV |
LLQEAGVS.PK.GYVAKSPDEA.AI.KKLGSKDVVI.AQ..A.GR.KGTFES..K.GVKIVF..EE.KAV | |
Retrocopy | LLQEAGVSLPK<GYVAKSPDEADAIVKKLGSKDVVIMAQNFACGRQKGTFESSPKKGVKIVFYQEE-KAV |
Parental | SSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAETPE |
SS..IGKKLFTK..GEK..ICNQVL.CE.KYPRREYYF..TMERSFQGPV.IGS..GGVN.EDV.AETP. | |
Retrocopy | SSRIIGKKLFTK*KGEKDKICNQVLICEQKYPRREYYFPVTMERSFQGPV*IGSLQGGVNTEDVSAETPD |
Parental | AIIK-EPIDIEEGIKKEQALQLAQKMGFPPNIVESAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLC |
..IK.E.ID..EGIKKEQALQLAQ...FP..IV.S.AENMVKLY.LFL.Y..TMI.I..MV.DSDGA.LC | |
Retrocopy | -VIK<ESIDVVEGIKKEQALQLAQNISFPSTIVDSVAENMVKLYNLFLNYNTTMIKISSMV*DSDGALLC |
Parental | MDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGG |
.D.KINFDSNS.YRQ.KIFDLQDWTQ..ER.KD.AK..LN..GL.G.IGC.VNGAGLA..T.DI.KLH.. | |
Retrocopy | LDTKINFDSNSVYRQ-KIFDLQDWTQKVERNKDEAKPHLNNTGLSGKIGCPVNGAGLAITTIDIRKLHKE |
Parental | TPANFLDVGGGATVHQVTEAFKLITSDKK |
TP..FL.V...A.VHQVTE...LITSDKK | |
Retrocopy | TPTSFLVVYVSAIVHQVTESLMLITSDKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 66 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 36 .21 RPM |
SRP007412_heart | 0 .00 RPM | 17 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .22 RPM |
SRP007412_liver | 0 .00 RPM | 11 .47 RPM |
SRP007412_testis | 0 .00 RPM | 37 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2281 |
Pan troglodytes | retro_ptro_1615 |
Pongo abelii | retro_pabe_1939 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014610 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009278 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000014961 | 1 retrocopy | |
Homo sapiens | ENSG00000136143 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008224 | 3 retrocopies |
retro_ggor_1668, retro_ggor_1694 , retro_ggor_2327,
|
Gorilla gorilla | ENSGGOG00000027438 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007539 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001488 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002948 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007452 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005352 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005859 | 3 retrocopies |