RetrogeneDB ID: | retro_acar_9 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:140193751..140194159(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000022716 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000006341 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.7 % |
Parental protein coverage: | 98.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | APLALMASPALLRCCSRALTRPASLSILSRPEIQTVQPFGISNNQLVHREFQTSAVSRDIDTAAKFIGAG |
APLALMASPALL.CCS.ALT.P.SLSILSRPE.QTVQPFGISN.QLV.REFQTS..S.DID.AAKFIGAG | |
Retrocopy | APLALMASPALLHCCSQALTSPTSLSILSRPETQTVQPFGISNHQLVQREFQTSVISCDIDAAAKFIGAG |
Parental | A--ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
A..ATVGVA.SGAG.GTVFGSLII.YA.NPSL.QQLF.YAILGFALSE.MGLFCLMVAFLI.F.M | |
Retrocopy | AGTATVGVADSGAGTGTVFGSLIISYAKNPSLNQQLFFYAILGFALSETMGLFCLMVAFLIFFTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 168 .77 RPM |
SRP009831_brain | 0 .00 RPM | 117 .36 RPM |
SRP009831_dewlap | 0 .00 RPM | 123 .27 RPM |
SRP009831_embryo | 0 .00 RPM | 172 .32 RPM |
SRP009831_heart | 0 .00 RPM | 532 .62 RPM |
SRP009831_liver | 0 .00 RPM | 137 .84 RPM |
SRP009831_lung | 0 .00 RPM | 34 .00 RPM |
SRP009831_ovary | 0 .00 RPM | 111 .96 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 122 .56 RPM |