RetrogeneDB ID: | retro_cjac_1190 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 14:16543183..16543575(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000016560 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G1 | ||
Ensembl ID: | ENSCJAG00000007352 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841] |
Percent Identity: | 79.55 % |
Parental protein coverage: | 96.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ALLISPALIRCCTRG-LIRPVSASFLNSPENSSKQPSSSSSPLQVARREFQTSVVSRDIDTAAKFIGAGA |
A..ISPAL...CTR..LIRPV.ASFLN.PENSS.Q...SSS.LQVARREFQT.VVSRD.DT.AKFIGAGA | |
Retrocopy | AAFISPALACYCTRF<LIRPVAASFLNGPENSSQQRFYSSSLLQVARREFQTRVVSRDTDTVAKFIGAGA |
Parental | ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
ATVGVAGSG.GI..VFGSLI...ARNPSLKQQLF..AILGFALS.AMGLFCLMV.FLILFAM | |
Retrocopy | ATVGVAGSGLGIQKVFGSLITCCARNPSLKQQLFFCAILGFALSVAMGLFCLMVTFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 10 .05 RPM |
SRP051959_heart | 0 .02 RPM | 18 .93 RPM |
SRP051959_kidney | 0 .00 RPM | 11 .94 RPM |
SRP051959_liver | 0 .02 RPM | 11 .74 RPM |
SRP051959_lung | 0 .05 RPM | 4 .07 RPM |
SRP051959_lymph_node | 0 .02 RPM | 3 .79 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 26 .14 RPM |
SRP051959_spleen | 0 .13 RPM | 4 .08 RPM |