RetrogeneDB ID: | retro_ocun_375 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:75790241..75790510(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G1 | ||
Ensembl ID: | ENSOCUG00000016225 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841] |
Percent Identity: | 90.11 % |
Parental protein coverage: | 66.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQATGSLLISPALVRCCTRGLLRPVSASFLSRPEDLPKQPP-CSSSPLQVARREFQTSVVSRDIDTAAKF |
MQATG.LLI.PALVRCCTRGLLRPVSASFLSRPEDLPKQ.P.CSSSPLQVARREFQTSVV.RDI.TAAKF | |
Retrocopy | MQATGLLLIFPALVRCCTRGLLRPVSASFLSRPEDLPKQLP<CSSSPLQVARREFQTSVVFRDINTAAKF |
Parental | IGAGAATVGVAGSGAGIGTVF |
IGA.AATVGVAGSGAGIG.V. | |
Retrocopy | IGARAATVGVAGSGAGIGSVW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 100 .83 RPM |
SRP017611_kidney | 0 .61 RPM | 188 .42 RPM |
SRP017611_liver | 0 .00 RPM | 37 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000006341 | 1 retrocopy | |
Bos taurus | ENSBTAG00000018339 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000007352 | 7 retrocopies | |
Cavia porcellus | ENSCPOG00000009017 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005744 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013395 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008933 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000012164 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016225 | 2 retrocopies |
retro_ocun_346, retro_ocun_375 ,
|
Otolemur garnettii | ENSOGAG00000011713 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000007235 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000017544 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008526 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007653 | 1 retrocopy |