RetrogeneDB ID: | retro_amel_104 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194220.1:38478..39525(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000018811 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000009557 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEDSGKTFGSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIETRNRDLLSENNR |
MEDSGKTFGSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIETRNRDLLSENNR | |
Retrocopy | MEDSGKTFGSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIETRNRDLLSENNR |
Parental | LRLELETIKEKFETQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQANDDLERAKRRATIMSLEDFE |
LRLELETIKEKFETQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQAN.DLERAK..ATIMSLEDFE | |
Retrocopy | LRLELETIKEKFETQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQANNDLERAK-QATIMSLEDFE |
Parental | QRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTGVQAT |
QRLNQAIERNAFLESELDEKENLLESVQ.LKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTGVQAT | |
Retrocopy | QRLNQAIERNAFLESELDEKENLLESVQQLKDEARDLRQELAVQQKQEKPRTPMPSSVEAERTDTGVQAT |
Parental | GSVPSTPIAHRGPSANLNTPGTFRRAHPGLDDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCGN |
GSVPSTPIAHRGPSANLNTPGTFRR...GLDDSTGGTPLTPAARI.ALNIVGDLLRKVGALESKLASCGN | |
Retrocopy | GSVPSTPIAHRGPSANLNTPGTFRR---GLDDSTGGTPLTPAARILALNIVGDLLRKVGALESKLASCGN |
Parental | FVYDQSPNRTSGPGSGRGSKHRDGGERQPSSAGLPLGDKGLGKRLEFGKPPSNISAPSLPSAQGVVKMLL |
FVYDQSPNRTSGPGSGRGSKHRDGGERQPSSAGLPLGDKGLGKRLEFGKPPSNISAPSLPSAQGVVKMLL | |
Retrocopy | FVYDQSPNRTSGPGSGRGSKHRDGGERQPSSAGLPLGDKGLGKRLEFGKPPSNISAPSLPSAQGVVKMLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009557 | 1 retrocopy |
retro_amel_104 ,
|
Canis familiaris | ENSCAFG00000018722 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006004 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000019614 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000019896 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005260 | 1 retrocopy |