RetrogeneDB ID: | retro_cpor_875 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_30:5028863..5029462(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDE1 | ||
Ensembl ID: | ENSCPOG00000019614 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.41 % |
Parental protein coverage: | 56.9 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIETRNRDLLSENNR |
MEDSG.TF.SEEE.ANYWKDL.MTYKQ.AENT.EE...F.EGS.EYEAELETQ.QQ.ETRN.DLLS..N. | |
Retrocopy | MEDSGMTFKSEEE*ANYWKDLSMTYKQKAENTWEEFQKFHEGSGEYEAELETQMQQSETRNQDLLSDSNS |
Parental | LRMELETVKEKFEMQHSEGYRQISALEDDLAQTKAIKDQLQ-KYIRELEQANDDLERAKRATIMSLEDFE |
L.MELETV...FEMQ..EGYR.ISALEDDL...KAIKDQL...YI.EL..AN..LERAK.A.IMSLEDFE | |
Retrocopy | LCMELETVRQNFEMQQFEGYRKISALEDDLT*MKAIKDQLE<EYIMELKKANNYLERAKQAMIMSLEDFE |
Parental | QRLNQAIERNAFLESELDEKENLLESVQRLKDEARGTDLRQELAVQQKQEKPRTPMPSAVEAE |
Q.LN.AIERN.FLESELD.K.N.LE.VQ.LKDEA...DLRQELAVQQKQ.KPRTP......A. | |
Retrocopy | QPLNKAIERNEFLESELD*KQNPLECVQ*LKDEAK--DLRQELAVQQKQKKPRTPIKGKPKAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .50 RPM |
SRP017611_liver | 0 .00 RPM | 8 .84 RPM |
SRP040447_lung | 0 .00 RPM | 43 .38 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 16 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009557 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018722 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006004 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012878 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000019614 | 2 retrocopies |
retro_cpor_875 , retro_cpor_876,
|
Ictidomys tridecemlineatus | ENSSTOG00000019896 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005260 | 1 retrocopy |