>retro_atha_11
ATGAAAGGTCTCTTCAAGAACAAATCACGTCTTCCTGGTGAAATCGTACGTCAGACTCGAGATCTCATCGCTTTAGCGGA
ATCCGAAGAAGAAGAAACCGATGCGAGAAACTCGAAAAGGTTAGGGATTTGTGCGGAGTTGTGTCGAAACATTAGAGATT
TGAAATCGATTCTTTATGGTAATGGTGAAGCTGAGCCTGTTCCTGAAGCTTGTCTTTTGTTAACTCAAGAGTTTTTCCGA
GCAGACACGCTTCGTCCTTTGATCAAATCTATACCAAAACTTGACCTAGAAGCAAGAAAAGACGCGACACAGATTGTCGC
GAATCTTCAGAAGCAACAAGTCGAATTTCGACTCGTTGCTTCTGAATATCTTGAATCGAACTTAGATGTTATCGATTCGT
TAGTCGAAGGTATCGATCACGACCATGAGCTGGCGTTGCATTACACGGGAATGCTTAAAGAATGTGTGCGGCATCAGGTT
GTTGCAAAGTACATACTCGAATCGAAGAATTTGGAGAAGTTTTTCGATTATGTTCAGCTTCCGTATTTCGATGTAGCTAC
CGATGCTAGCAAGATCTTCAGAGAGCTTTTGACGAGGCATAAATCGACTGTAGCGGAGTATCTTGCGAAGAACTACGAAT
GGTTTTTCGCAGAGTATAACACCAAGTTGTTGGAGAAAGGAAGCTATTTTACGAAGAGACAAGCGTCGAAATTGCTTGGA
GATGTGTTGATGGATCGTTCGAATTCAGGTGTGATGGTAAAGTATGTGAGCAGTTTGGATAATTTGAGAATCATGATGAA
TCTTTTAAGAGAACCAACCAAGAACATTCAGTTAGAAGCATTTCATATCTTTAAACTCTTTGTGGCAAACGAGAACAAAC
CTGAGGATATCGTGGCGATTCTCGTGGCGAATCGGACCAAGATTCTTCGTTTGTTTGCTGATTTGAAACCTGAGAAAGAA
GATGTAGGTTTTGAAACTGATAAAGCATTGGTTATGAATGAGATTGCTACACTTTCTCTTCTCGATATCAAAACCGCAGA
TCGATAA
ORF - retro_atha_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.6 % |
Parental protein coverage: |
99.71 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEA |
| MKGLFK.K.R.P...VRQTRDL...........D.R.SKR....AEL.RNIRD.KSILYGN.EAEPV.EA |
Retrocopy | MKGLFKNKSRLPGEIVRQTRDLIALAESEEEETDARNSKRLGICAELCRNIRDLKSILYGNGEAEPVPEA |
|
Parental | CAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFEN |
| C..LTQEFF..DTLR.LI...PKL.LE.RKDATQ.VANLQ.QQV..RL.AS.YLE.N.D..D.L.EG... |
Retrocopy | CLLLTQEFFRADTLRPLIKSIPKLDLEARKDATQIVANLQKQQVEFRLVASEYLESNLDVIDSLVEGIDH |
|
Parental | T-DMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLTK |
| ....ALHY..M..EC.RHQ.VAKY.LES....KFFDY.QLP.FD.A.DA...F.ELLTRHKSTVAE.L.K |
Retrocopy | DHELALHYTGMLKECVRHQVVAKYILESKNLEKFFDYVQLPYFDVATDASKIFRELLTRHKSTVAEYLAK |
|
Parental | NEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEA |
| N..WFFA.YN.KLLE...Y.T.RQA.KLLGD.L.DRSNS.VM.KYVSS.DNLRI.MNLLRE..K.IQ.EA |
Retrocopy | NYEWFFAEYNTKLLEKGSYFTKRQASKLLGDVLMDRSNSGVMVKYVSSLDNLRIMMNLLREPTKNIQLEA |
|
Parental | FHVFKLFAANQNKPADIVNILVANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRDL |
| FH.FKLF.AN.NKP.DIV.ILVANR.K.LRL.ADLKP.KED..FE.DK..V..EIA.L...D. |
Retrocopy | FHIFKLFVANENKPEDIVAILVANRTKILRLFADLKPEKEDVGFETDKALVMNEIATLSLLDI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Arabidopsis thaliana was not studied using RNA-Seq expression data.
Arabidopsis thaliana was not studied using ChIP-Seq data.
Arabidopsis thaliana was not studied using EST data.
Arabidopsis thaliana was not studied using FANTOM5 data.
retro_atha_11 was not experimentally validated.
Retrocopy orthology:
Arabidopsis thaliana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.