>retro_bole_12
ATGGATTCCGATGACTACTACATGGAATCTGGAGAGGAAGATCTTTACAGCGACGGTGCAGATGATTACAACGACGGGGC
TGATCATGATGATGATAAAGATGACACGGGTTTCCTCGGGGATGACGATGACGATTCCTCGATGATCTCCTCGCCTCGCT
CCGATATAAATTATGTCGTTCTCAAGGAAGAAGATATACGTAGAAAACAGGAGAGTGATATTGCACAAGTTTCCATGATA
CTCTCCGTAAGCAAGGTCGAAGCTAGTGTTCTGCTTCTTCACTATCACTGGAATGTTGGTAAAGTTAATGATGAATGGTT
TGCGGATGAGAGGAGGGTTCGGACAAGTGCTGGCTTGGAAGGAGGATCTGTTATTGTTCCATATTCTAAAGGCGGAAAAG
TTGCTTGTGGAATATGCTTTGACTACTTCTGTCCTATAGATATTGTACCGATTCTGTGTGGCCATGCTTTCTGTTCTACA
TGCTGGACAAGTTACATCAGCATAGCCATCAACGATGGCCCAGGATGTTTGATGCAAAAATGTCCTGAGCCATCTTGTCC
AGTTGCTGTTGGTCGAGACATGGTCGAGAAACTGGCTTCCTTTGAAGCCAAGGACAAGTATGATAGGTATTTTCTTAGAT
CTTATGTGGAAGAAAGCAAAAAGACCAAGTGGTGTCCTTCCCCAGGATGTGAGCATGCCATTGAGTTTTCTGCCACCGGG
ACCGGAAGTAGTTACGATGTTTCATGCTTGTGTTCGCATAGCTTCTGCTGGAACTGCACCGAAGACGCTCACCGTCCTGT
GGATTGTGACAGGGTTTCGCAATGGATACGCAAGAACAGCGTTGAAGCTGAAAATACCAAGTGGATACTCGACAATTCCA
AGCCTTGTCCCAAGTGCAAGCGTCCAATTGAAAAGAACCATGGATGCATGCACATGTCATGCACACCACCTTGCAGACAT
CAGTTTTGTTGGCTTTGCCTTGGCGCATGGTCGGAACACGGGGAAGGCACTGGCGGGCCTTATACATGCAACCGGTATTC
GAAGGCTAAGGGACAAGGACTGCATGATGAGGCTGAAATGAAGCGAGAGATGGCAAAGCACTCGCTAGAGAAATACACTC
ATTATTATGAGCGCTGGGCAGGTAATCAAATGTCGAGGCAAAAAGCTATAGGGGATCTACAGAAGTTCCTATCAGTGGAT
GTTATGAAGCTTAGTGACAAACAATGCATACCAGAAACTGAGCTCGGGTTCATCACAGATGCGTGGCTTCAGATCATTGA
ATGCAGAAGGGTGCTGAAATGGACATATGCATACGGGTACTATCTACTTGAATCTGAACAGGAAAAGAGACAGTTTTTCG
AGTATATGCAAGGAGAGGCTGAGTCTGGTCTGGAGAGGCTCCACAAATGCGTTGAGTTGGAATCAGAGGTGTTTCAATAT
CCTGAAGACGCTCCAAAACAAGACTTCAAGGGTTTTCGGACAAAACTAACTACTTTGACCAGTGTAACCAAATCTCACTT
CGAAACTCTGGTGAAAGCTCTGGAGAATGATCTTGCTGATGTTGGATTCGCAAGATAG
ORF - retro_bole_12 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
68.65 % |
Parental protein coverage: |
91.59 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NDHDMESGEEEDDFYSGETDDYN---DSDGGEPDYGFVEEDVDDSVMIASHRSQVNYVVLKEEDIRRHQK |
| .D..MESGEE..D.YS...DDYN...D.D....D.GF...D.DDS.MI.S.RS..NYVVLKEEDIRR.Q. |
Retrocopy | DDYYMESGEE--DLYSDGADDYNDGADHDDDKDDTGFLGDDDDDSSMISSPRSDINYVVLKEEDIRRKQE |
|
Parental | DDIGQVSMVLSISEVEASILLLHYHWSVSKVHDEWFADEERVRKTVGILDGPVIPTPDDSGELTCGICFE |
| .DI.QVSM.LS.S.VEAS.LLLHYHW.V.KV.DEWFADE.RVR...G...G.VI......G...CGICF. |
Retrocopy | SDIAQVSMILSVSKVEASVLLLHYHWNVGKVNDEWFADERRVRTSAGLEGGSVIVPYSKGGKVACGICFD |
|
Parental | TFPPEEILSVACGHPFCSTCWTGYISTTINGGPGCLMLKCPEPSCPAAVGQDMFEKLASKEDKEKYYRYF |
| .F.P..I....CGH.FCSTCWT.YIS..IN.GPGCLM.KCPEPSCP.AVG.DM.EKLAS.E.K.KY.RYF |
Retrocopy | YFCPIDIVPILCGHAFCSTCWTSYISIAINDGPGCLMQKCPEPSCPVAVGRDMVEKLASFEAKDKYDRYF |
|
Parental | IRSYVEDNRKMKWCPAPGCEHAIDFAA-GTGS-YDVSCLCSHSFCWNCTEEAHRPVDCETVAQWIRKNSA |
| .RSYVE...K.KWCP.PGCEHAI.F.A.GTGS.YDVSCLCSHSFCWNCTE.AHRPVDC..V.QWIRKNS. |
Retrocopy | LRSYVEESKKTKWCPSPGCEHAIEFSATGTGSSYDVSCLCSHSFCWNCTEDAHRPVDCDRVSQWIRKNSV |
|
Parental | ESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKYEFCWLCLNAWTDHGERTGGFYACNKYEAGKQ |
| E.EN..WIL.NSKPCPKCKRPIEKNHGCMHM.CTPPC...FCWLCL.AW..HGE.TGG.Y.CN.Y...K. |
Retrocopy | EAENTKWILDNSKPCPKCKRPIEKNHGCMHMSCTPPCRHQFCWLCLGAWSEHGEGTGGPYTCNRYSKAKG |
|
Parental | EGRYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMVDLEKARSEKLEKLSDIHGTPESQLKCITEA |
| .G..DEAE..REMAK.SLE.YTHYYERWA.NQ.SRQKA..DL.K..S....KLSD....PE..L..IT.A |
Retrocopy | QGLHDEAEMKREMAKHSLEKYTHYYERWAGNQMSRQKAIGDLQKFLSVDVMKLSDKQCIPETELGFITDA |
|
Parental | WLQIIECRRVLKWTYAYGYYL--PDHDKKQFFEYLQGEAESGLERLHKCVEKELEVFLVAE-GPSDDFNH |
| WLQIIECRRVLKWTYAYGYYL......K.QFFEY.QGEAESGLERLHKCVE.E.EVF...E..P..DF.. |
Retrocopy | WLQIIECRRVLKWTYAYGYYLLESEQEKRQFFEYMQGEAESGLERLHKCVELESEVFQYPEDAPKQDFKG |
|
Parental | FRTKLTGLTSITKTYFENLVKALENGLADV |
| FRTKLT.LTS.TK..FE.LVKALEN.LADV |
Retrocopy | FRTKLTTLTSVTKSHFETLVKALENDLADV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_12 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.