>retro_bole_13
ATGGACTCCGATGATGACATGCTCGATGCCTACGATGAGGAATCAGGAGAGTATGATCTTTACAGCGACGTTGATGATGA
ACACGGCCATGGTGGTGAAGATGATTCCGATTACATTCTTGAGGAAGTCGTGGACGATTCTATAACTCATGGCTCTCAGA
TTAATTACGTCGTACTCAAGGAAGAAGACATCCGGAAACGACAGGAGGATGAGATCAAACAACTTTCTACGGTCCTCTCC
ATAACCAACGCAGAAGCTAGCGTTCTGCTTCTCCACTACCGCTGGAACGTTAGTAAACTTACTGACGAATGGTTTGCCGA
CGAGGACAAAGTTCGGAGAACTGTTGGCGTATTGGAGGGAGGAGGAGGATCTGTTGTTGTCGTTGAAAATCATCGAAAAG
TTAAATGCGGAATATGCTTTGACAAATTTCGTCGTAAAAAGATTGTACCCGTAGCATGCGGTCATACTTTCTGTTCTACA
TGCTGGAACGGTTACATCACCACAGCAATCAACGACGGCTCGGGATGCTTGATGCAAAAGTGTCCCGAGCCGTCTTGTCA
CCTTGCTATCGGCGGCGACATGGTCGAGAAGCTGGTTTCCGAGGAAGACCTGAGAAAATACCGGTTGTATTTTCTCAGGT
CTTATATCGAAGAAAGCAAGAAGATGAAGTGGTGCCCCGCTCCCGGATGCGAGGGCGCGGTCGATTTTTCCGCGAGCGGG
ACGAGTATTAACTACGATGTTTCGTGCTCGTGCTCGCATAGATTCTGCTGGAACTGCAACGAGGACGCTCACAGCCCCGT
GGACTGCGACACGGTTTCGCAGTGGATACTCAAGAACAGCGCGGAAGCGGAGAATACGGCGTGGATACTCGCTAACTCGA
AGGCTTGCCCCAAGTGCAAGCGGCCGATCGAGAAGAACCACGGATGCATGCACATGACGTGCGGTCCGCCTTGCAAGCAT
GAGTTTTGTTGGCTTTGCCTCGGCGCGTGGAGAGATCACGGGGACCGCACGGGCGGGTTTAATGCGTGCAACAAGTACGA
GAAGGATAAGAAACAAGGACTGTACGATGACGTTGAGAAGAAGCGACAGATGGCGAAGAGCTCGTTGGAGAGGTACACTC
ATTACTACGAACGATGGGCGAGCAATGAAAAGTCGAGGGGGAAAGCTTTCGGAGATCTACAGGTGTTCTTAACGGAGAAG
ATTGCGAAGCTTAGTGTGATTCAGTGCATACCGGAGACTCAGCTGACGTTCGTCACAGATGCGTGGCTTCAGATCATCGA
ATGCAGACGGGTGCTGAAATGGACGTATGCGTATGGGTACTATCTACCTGAATCTGAGCGTGAGAAGCGGTGTTTTTTCG
AGTACGTGCAAGGGGAGGCCGAGTCTGGTTTGGAGAGGCTCCACAAATGCGTTGAGACGGAGGTGTTTCAGGGTGCTGAA
GAGCGGTCGGAACTAGAGTTTACCGCTTTCCGGGAGAAATTATCTAATTTGACCAGCGTGACGAAGAGACACTTTGAAAC
TCTGGTGAAAGCTCTGGAGAATGGTCTCGCTGATGTCGAGTCTCAAGCGGCTTGCAACAAAGAAACAGAATCATTAAAAA
CAGAAATAAAAAGCAAAGAAACAACGTCTAAAAAAAGGCGGACGTGA
ORF - retro_bole_13 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.12 % |
Parental protein coverage: |
96.94 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MDSEDDLLGAHDMESGEDDFYSGGGSDDDYNETDGDEPDYGFVEEDVDDSVMIASHRSQINYVVLKEEDI |
| MDS.DD.L.A.D.ESGE.D.YS....DD.......D..DY...EE.VDDS.....H.SQINYVVLKEEDI |
Retrocopy | MDSDDDMLDAYDEESGEYDLYSD--VDDEHGHGGEDDSDY-ILEEVVDDSI---THGSQINYVVLKEEDI |
|
Parental | RRLQMDDIGRVSMVLSISEAEASILLLHYHWSVSKVHDEWFADEERVRKAVGILER---PVVSTLDGGEL |
| R..Q.D.I...S.VLSI..AEAS.LLLHY.W.VSK..DEWFADE..VR..VG.LE.....VV........ |
Retrocopy | RKRQEDEIKQLSTVLSITNAEASVLLLHYRWNVSKLTDEWFADEDKVRRTVGVLEGGGGSVVVVENHRKV |
|
Parental | TCGICFEPFQREEVVSLACGHPFCSTCWTGYISTTINDGPGCLMLKCPEPSCPAAVGQDMFEKFASKEDK |
| .CGICF..F.R...V..ACGH.FCSTCW.GYI.T.INDG.GCLM.KCPEPSC..A.G.DM.EK..S.ED. |
Retrocopy | KCGICFDKFRRKKIVPVACGHTFCSTCWNGYITTAINDGSGCLMQKCPEPSCHLAIGGDMVEKLVSEEDL |
|
Parental | EKYYKYFLRSYIEDNRKMKWCPAPGCENAIEFTA-GTS-NYDVSCSCSRSFCWNCTEEAHRPVDCHTVAQ |
| .KY..YFLRSYIE...KMKWCPAPGCE.A..F.A.GTS.NYDVSCSCS..FCWNC.E.AH.PVDC.TV.Q |
Retrocopy | RKYRLYFLRSYIEESKKMKWCPAPGCEGAVDFSASGTSINYDVSCSCSHRFCWNCNEDAHSPVDCDTVSQ |
|
Parental | WIRKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKYEFCWLCLNAWTAHGERTGGFYACN |
| WI.KNSAE.EN..WILANSK.CPKCKRPIEKNHGCMHMTC.PPCK.EFCWLCL.AW..HG.RTGGF.ACN |
Retrocopy | WILKNSAEAENTAWILANSKACPKCKRPIEKNHGCMHMTCGPPCKHEFCWLCLGAWRDHGDRTGGFNACN |
|
Parental | RYESAKQEGLYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAVEDLQKAQLEKLEKLSDIQCTPESQ |
| .YE..K..GLYD..EK.R.MAK.SLERYTHYYERWASN..SR.KA..DLQ....EK..KLS.IQC.PE.Q |
Retrocopy | KYEKDKKQGLYDDVEKKRQMAKSSLERYTHYYERWASNEKSRGKAFGDLQVFLTEKIAKLSVIQCIPETQ |
|
Parental | LKFITEAWLQIIECRRVLKWTYAYGYYLP--DHDKKQFFEYLQGEAESGLERLHKCVEKELEVFLNAEGS |
| L.F.T.AWLQIIECRRVLKWTYAYGYYLP.....K..FFEY.QGEAESGLERLHKCV..E.EVF..AE.. |
Retrocopy | LTFVTDAWLQIIECRRVLKWTYAYGYYLPESEREKRCFFEYVQGEAESGLERLHKCV--ETEVFQGAEER |
|
Parental | SD-NFNHFRTKLTGLTSITKTYFENLVKALENGLADVDTTQGASSKSTSSKSSKTK |
| S...F..FR.KL..LTS.TK..FE.LVKALENGLADV...Q.A..K.T.S.....K |
Retrocopy | SELEFTAFREKLSNLTSVTKRHFETLVKALENGLADVE-SQAACNKETESLKTEIK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_13 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.