RetrogeneDB ID: | retro_btau_1655 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:67661774..67662152(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDT21 | ||
Ensembl ID: | ENSBTAG00000010207 | ||
Aliases: | None | ||
Description: | Cleavage and polyadenylation specificity factor subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZCA2] |
Percent Identity: | 95.24 % |
Parental protein coverage: | 55.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEH |
.FFKLPGGELNPGEDEVEGLK.LMTEILGRQDGVLQDWVIDDC.GNWWRPNFEPP.YPYIPAHITKPKEH | |
Retrocopy | SFFKLPGGELNPGEDEVEGLKHLMTEILGRQDGVLQDWVIDDCTGNWWRPNFEPPHYPYIPAHITKPKEH |
Parental | KKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN |
.KLFLVQLQEKALFAVPKNYKL.AAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN | |
Retrocopy | RKLFLVQLQEKALFAVPKNYKLAAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 6 .49 RPM |
ERP005899_muscle | 0 .05 RPM | 18 .69 RPM |
SRP017611_brain | 0 .05 RPM | 14 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .46 RPM |
SRP017611_liver | 0 .00 RPM | 6 .87 RPM |
SRP030211_testis | 0 .03 RPM | 27 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010207 | 2 retrocopies |
retro_btau_1655 , retro_btau_937,
|
Callithrix jacchus | ENSCJAG00000012724 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000028465 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003451 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001963 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017224 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006493 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000029848 | 2 retrocopies |