RetrogeneDB ID: | retro_sscr_185 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:146599286..146599756(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000004786 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000029848 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.68 % |
Parental protein coverage: | 90.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSVVPPNRSQTGW-PRGVNQYGNKYIQQTKPLSLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMRE |
MSVVPPN.SQT.W.PRGVNQYGNKY.QQTK.L.LERTINLYPLTNYTFGTKEPLY.KDSSVA.RFQ.MRE | |
Retrocopy | MSVVPPNQSQTSW>PRGVNQYGNKYMQQTKRLTLERTINLYPLTNYTFGTKEPLY-KDSSVATRFQHMRE |
Parental | EFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEV-EGLKRLMTEILGRQDGVLQD |
EFDKIGMRRTVEGVLIVHEH.LPHVLLLQL.TTFFKLPGGELN..EDEV.EG.K.LMTEILG.QDGVLQD | |
Retrocopy | EFDKIGMRRTVEGVLIVHEHQLPHVLLLQLETTFFKLPGGELNTREDEV>EGQKHLMTEILGCQDGVLQD |
Parental | WVIDDCIGNWWRPNFEPPQ |
WVIDDCIGNWWRPN.EPPQ | |
Retrocopy | WVIDDCIGNWWRPNCEPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 15 .40 RPM |
SRP014902_testis | 2 .69 RPM | 17 .54 RPM |
SRP018288_heart | 2 .83 RPM | 12 .49 RPM |
SRP018288_kidney | 3 .05 RPM | 21 .28 RPM |
SRP018288_liver | 1 .92 RPM | 15 .51 RPM |
SRP018288_lung | 2 .14 RPM | 26 .78 RPM |
SRP018856_adipose | 0 .89 RPM | 18 .46 RPM |
SRP035408_brain | 0 .29 RPM | 8 .07 RPM |
SRP035408_liver | 0 .62 RPM | 9 .01 RPM |