Parental gene:

ENSOCUG00000017224

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:5:12760903..12781768(-)


>ENSOCUG00000017224
ATGTCGGTGGTACCGCCCAATCGCTCGCAGACCGGCTGGCCCCGCGGGGTCAATCAGTTCGGCAACAAGTACATCCAGCA
GACCAAGCCCCTCACCCTGGAGCGCACCATCAACCTTTATCCTCTTACCAATTATACTTTTGGTACAAAAGAGCCTCTCT
ATGAGAAGGACAGTTCTGTTGCAGCCAGATTTCAGCGCATGCGGGAAGAATTTGATAAAATTGGAATGAGGAGGACTGTA
GAAGGGGTTCTGATTGTACACGAGCACCGGCTACCCCATGTGTTACTGCTACAACTGGGAACAACTTTCTTCAAATTACC
TGGTGGTGAACTTAACCCAGGAGAAGATGAAGTTGAAGGACTAAAACGCTTAATGACAGAGATACTAGGCCGCCAAGATG
GAGTTCTGCAAGACTGGGTCATTGATGACTGCATTGGTAACTGGTGGAGACCAAATTTTGAACCTCCTCAGTATCCATAT
ATTCCTGCACATATTACAAAGCCTAAGGAACATAAGAAGTTGTTTCTGGTTCAACTTCAAGAGAAAGCCTTGTTTGCAGT
CCCTAAAAATTACAAGCTGGTAGCTGCACCATTGTTTGAATTGTATGACAATGCACCAGGATATGGACCCATCATTTCTA
GTCTCCCTCAGCTGTTGAGCAGGTTCAATTTTATATACAACTGA

Library Parental gene expression (RPM)
SRP017611_liver 8 .71 RPM
SRP017611_kidney 14 .90 RPM
SRP017611_brain 14 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016628 ortholog_one2one 1 retrogene
retro_amel_540,
Bos taurus ENSBTAG00000010207 possible_ortholog 2 retrogenes
retro_btau_1655, retro_btau_937,
Callithrix jacchus ENSCJAG00000012724 possible_ortholog 3 retrogenes
retro_cjac_1121, retro_cjac_2211, retro_cjac_4100,
Cavia porcellus ENSCPOG00000003705 possible_ortholog 1 retrogene
retro_cpor_1054,
Equus caballus ENSECAG00000001043 ortholog_one2one 1 retrogene
retro_ecab_292,
Erinaceus europaeus ENSEEUG00000003402 ortholog_one2one 1 retrogene
retro_eeur_35,
Echinops telfairi ENSETEG00000013634 possible_ortholog 1 retrogene
retro_etel_622,
Felis catus ENSFCAG00000008669 possible_ortholog 1 retrogene
retro_fcat_1843,
Loxodonta africana ENSLAFG00000028465 ortholog_one2many 1 retrogene
retro_lafr_610,
Myotis lucifugus ENSMLUG00000004968 ortholog_one2one 2 retrogenes
retro_mluc_1576, retro_mluc_999,
Macaca mulatta ENSMMUG00000019906 possible_ortholog 1 retrogene
retro_mmul_1360,
Mustela putorius furo ENSMPUG00000003451 ortholog_one2one 1 retrogene
retro_mputfur_158,
Mus musculus ENSMUSG00000031754 possible_ortholog 3 retrogenes
retro_mmus_1949, retro_mmus_1950, retro_mmus_2142,
Nomascus leucogenys ENSNLEG00000001963 possible_ortholog 2 retrogenes
retro_nleu_1477, retro_nleu_2493,
Otolemur garnettii ENSOGAG00000014888 possible_ortholog 2 retrogenes
retro_ogar_1450, retro_ogar_630,
Ochotona princeps ENSOPRG00000006689 possible_ortholog 1 retrogene
retro_opri_637,
Pteropus vampyrus ENSPVAG00000014583 possible_ortholog 2 retrogenes
retro_pvam_533, retro_pvam_711,
Sorex araneus ENSSARG00000006493 possible_ortholog 2 retrogenes
retro_sara_161, retro_sara_580,
Sarcophilus harrisii ENSSHAG00000009651 ortholog_one2many 1 retrogene
retro_shar_469,
Sus scrofa ENSSSCG00000029848 possible_ortholog 2 retrogenes
retro_sscr_117, retro_sscr_185,
Tupaia belangeri ENSTBEG00000007664 ortholog_one2one 1 retrogene
retro_tbel_4003,
Tarsius syrichta ENSTSYG00000014602 possible_ortholog 4 retrogenes
retro_tsyr_1685, retro_tsyr_1888, retro_tsyr_790, retro_tsyr_988,
Tursiops truncatus ENSTTRG00000013545 possible_ortholog 1 retrogene
retro_ttru_1087,
Vicugna pacos ENSVPAG00000003701 ortholog_one2one 2 retrogenes
retro_vpac_340, retro_vpac_605,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_87 94.27 100.00
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2. retro_ocun_154 98.68 100.00
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Download FASTA sequences of all ENSOCUG00000017224 retrocopies