>retro_btau_1659
AACACTCAAGGAACTGGTTCTTCGTCCTCTGGAATTTTAATGGTTGGATCTAACTTTAGAGTTGGGAAAAAAAACTGGAT
ATGGGAATTTTGGAGAACTACAATTAGGAAAAAATTTGTATACAAATGAATATATGGCCATTAAATTGGAGCTCATGAAA
TCCAGAGCATCACAGCTACATTTGACTGTATTCCAATTTCTACAAGCAGTTAGGATCTGGAGATGGTATACCTCAAGTTT
ATTATTTTGGCCCTTGTGGTAAATACAGCACTATGGTGATAGAACTGCTGGGACCTATTTTGCAAGATTTGTTTGATTTG
TGTGACAGAACATTTTCTCTTAAAACTATTCTCATGATAGCTATCTAACTGATTTCTCACATGCAATATGTCCATTCAAA
GAACTTGATATACAGAGATGTAAAACCTGAGAACTGTTTAATAGGCTGTCTGGGAAACAAAACACAGCAAGTTATTCATA
TTATAGATTTTGGTTTGGCAAAGGAATATACTGATCCAGAGACAAAGAAACACATACCATACAAAGAGCACAAAAGCCTT
ATAGGAACAGCTATATATATGAGCACAAACACACATTTAGGGAAAGAACAAAGTAGAAGAGATGACTTAGAAGCTTTAGG
TCACATGTTCATGTATTTTCTGAGAGGCAGTCTTCCTTGGCAAGGTTTAAAAGCTGACACATTAAAAAAGCAATATCAGA
AAATTGGAGATACGAAACGAGCCACACCAATAGAAGTGTAATGTGAAAATTTTCCAGAAGAAATGGCAATGTATCTTTGT
TATGTAAGAAGGCTAGATTTTTTTGAAAAACCAGATTATGACTACCTAAGAAGGCTTTTTACTGACTTGTTTGATGGAAA
AGGATATATGTTGATTATGAATATGACTGGATTGGTAAATAGTTGCCTACTCTAGTGGGTCCATTCAGCAAGATCCTGCT
CTGTATATCAATCAGAGGAGCACATCCACATGGAGATAAGATACAATCCCAAAATCAGGTT
ORF - retro_btau_1659 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.06 % |
Parental protein coverage: |
80.09 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | NTRGTGSSSSGVLMVGPNFRVGKKI-GCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLE-YRF-YK |
| NT.GTGSSSSG.LMVG.NFRVG....G.GNFGEL.LGKNLYTNEY.AIKLE.MKSRA.QLHL....F.YK |
Retrocopy | NTQGTGSSSSGILMVGSNFRVGXXX>GYGNFGELQLGKNLYTNEYMAIKLELMKSRASQLHLTVFQF>YK |
|
Parental | QLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYR |
| QLGSGDGIPQVYYFGPCGKY..MV.ELLGP.L.DLFDLCDRTFSLKT.LMIAI.LIS.M.YVHSKNLIYR |
Retrocopy | QLGSGDGIPQVYYFGPCGKYSTMVIELLGPILQDLFDLCDRTFSLKTILMIAI*LISHMQYVHSKNLIYR |
|
Parental | DVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDD |
| DVKPEN.LIG..GNKTQQVIHIIDFGLAKEY.DPETKKHIPY.EHKSL.GTA.YMS.NTHLGKEQSRRDD |
Retrocopy | DVKPENCLIGCLGNKTQQVIHIIDFGLAKEYTDPETKKHIPYKEHKSLIGTAIYMSTNTHLGKEQSRRDD |
|
Parental | LEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPD |
| LEALGHMFMYFLRGSLPWQGLKADTLK..YQKIGDTKRATPIEV.CENFP.EMA.YL.YVRRLDFFEKPD |
Retrocopy | LEALGHMFMYFLRGSLPWQGLKADTLKKQYQKIGDTKRATPIEV*CENFPEEMAMYLCYVRRLDFFEKPD |
|
Parental | YDYLRKLFTDLFDRKGYMF-DYEYDWIGKQLPTPV-GAVQQDPALSSN-REAHPHRDKIQSKNQV |
| YDYLR.LFTDLFD.KGYM..DYEYDWIGK.LPT.V.G..QQDPAL..N.R.AHPH.DKIQS.NQV |
Retrocopy | YDYLRRLFTDLFDGKGYML<DYEYDWIGK*LPTLV<GSIQQDPALYIN>RGAHPHGDKIQSQNQV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
19 .32 RPM |
ERP005899_muscle |
0 .00 RPM |
22 .33 RPM |
SRP017611_brain |
0 .00 RPM |
19 .55 RPM |
SRP017611_kidney |
0 .00 RPM |
26 .02 RPM |
SRP017611_liver |
0 .00 RPM |
9 .06 RPM |
SRP030211_testis |
0 .00 RPM |
13 .34 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1659 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1659 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1659 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
7 parental genes, and
9 retrocopies.