RetrogeneDB ID: | retro_mmus_3454 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:53418330..53418967(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083798 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Csnk1g3 | ||
Ensembl ID: | ENSMUSG00000073563 | ||
Aliases: | Csnk1g3, 3300002K07Rik, C330049O21Rik | ||
Description: | casein kinase 1, gamma 3 [Source:MGI Symbol;Acc:MGI:1917675] |
Percent Identity: | 97.66 % |
Parental protein coverage: | 50.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQ |
GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQ | |
Retrocopy | GKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQ |
Parental | QVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLP |
QVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLP | |
Retrocopy | QVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLP |
Parental | WQGLKADTLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRL-DFFEKPDYDYLRKLFTDLFDRKG |
WQGLKADTLKERYQKIGDTKRATPIEVLCENFPE.MATYLRYVRRL....EKPDYDYLRKLFTDLFDRKG | |
Retrocopy | WQGLKADTLKERYQKIGDTKRATPIEVLCENFPE-MATYLRYVRRL>XXXEKPDYDYLRKLFTDLFDRKG |
Parental | YMFD |
YMFD | |
Retrocopy | YMFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .89 RPM | 53 .31 RPM |
SRP007412_cerebellum | 1 .00 RPM | 44 .77 RPM |
SRP007412_heart | 0 .16 RPM | 12 .61 RPM |
SRP007412_kidney | 1 .27 RPM | 42 .91 RPM |
SRP007412_liver | 0 .87 RPM | 38 .29 RPM |
SRP007412_testis | 0 .50 RPM | 11 .80 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
CX214499 | 53418547 | 53418663 | 100 | 116 | 0 | 116 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017550 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017348 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006646 | 1 retrocopy | |
Mus musculus | ENSMUSG00000002205 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073563 | 1 retrocopy |
retro_mmus_3454 ,
|
Otolemur garnettii | ENSOGAG00000011587 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016677 | 1 retrocopy |