RetrogeneDB ID: | retro_btau_1699 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 9:26785905..26786247(-) | ||
Located in intron of: | ENSBTAG00000021667 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.22851 | ||
Ensembl ID: | ENSBTAG00000039732 | ||
Aliases: | None | ||
Description: | protein Muted homolog [Source:RefSeq peptide;Acc:NP_001092345] |
Percent Identity: | 78.07 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GGGGGKKKDSQGFTGSPAHLIIKDLGEIHSRLLDHRPVIQGETRYFVKEFEEKRGLREMRVLENLKNMIH |
G..GGKKKD..G.TGSP.HLIIKDLGEIHS.LLDH.PVI.G.T.YF..EFEEK.GLREM.VLENLKN... | |
Retrocopy | GKSGGKKKDLLGTTGSPVHLIIKDLGEIHSSLLDHKPVIHGKTHYFLIEFEEKCGLREMQVLENLKNTTY |
Parental | ETNEHTLPTCRATMQDSLNQVLQRLQAATDSVRRLQQREQERKK |
ETNEHTL..CR.TMQD.LNQVLQRLQ.ATDSV.RLQQREQERK. | |
Retrocopy | ETNEHTLLKCRETMQDNLNQVLQRLQPATDSVCRLQQREQERKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 14 .56 RPM |
ERP005899_muscle | 0 .00 RPM | 23 .60 RPM |
SRP017611_brain | 0 .09 RPM | 14 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .52 RPM |
SRP017611_liver | 0 .00 RPM | 9 .36 RPM |
SRP030211_testis | 0 .01 RPM | 11 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017324 | 1 retrocopy | |
Bos taurus | ENSBTAG00000039732 | 2 retrocopies |
retro_btau_1699 , retro_btau_1747,
|
Monodelphis domestica | ENSMODG00000010026 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000025755 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030827 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027342 | 3 retrocopies |