RetrogeneDB ID: | retro_btau_1747 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:70346245..70346812(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.22851 | ||
Ensembl ID: | ENSBTAG00000039732 | ||
Aliases: | None | ||
Description: | protein Muted homolog [Source:RefSeq peptide;Acc:NP_001092345] |
Percent Identity: | 84.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MSGGGTETPVGCEAAQGGGGGGKKKDSQGFTGSPAHLIIKDLGEIHSRLLDHRPVIQGETRYFVKEFEEK |
.S..GTET.VGCEAA..GGGG.KKKDS.GF.GSPA.LIIKDLGEIHSRLLDH.PVIQGETRYFVKEFEEK | |
Retrocopy | VSLSGTETLVGCEAAPRGGGG-KKKDSLGFAGSPAYLIIKDLGEIHSRLLDH*PVIQGETRYFVKEFEEK |
Parental | RGLREMRVLENLKNMIHETNEHTLPTCRATMQDSLNQVLQRLQAATDSVRRLQQREQERKKIHNDLLIAS |
.GL.EMRVLENLKNMIH.T.EHTL.TCR.TMQD.L.QVLQRLQAATDSV.R..QREQE.KKIHNDLL.AS | |
Retrocopy | HGL*EMRVLENLKNMIHGTSEHTLLTCRETMQDNLDQVLQRLQAATDSVCRFHQREQE*KKIHNDLLMAS |
Parental | EKQHVTQWEDFMKEQHSKQAEVDEEHRKAMEKLREQYAEMEKGLAKFSAF |
EKQH.TQWEDFMKEQHSKQAEVDEEHR.AMEKLREQY.EMEK.LA.FS.F | |
Retrocopy | EKQHRTQWEDFMKEQHSKQAEVDEEHRMAMEKLREQYPEMEKDLARFSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .22 RPM | 14 .56 RPM |
ERP005899_muscle | 0 .00 RPM | 23 .60 RPM |
SRP017611_brain | 0 .09 RPM | 14 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .52 RPM |
SRP017611_liver | 0 .00 RPM | 9 .36 RPM |
SRP030211_testis | 0 .00 RPM | 11 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017324 | 1 retrocopy | |
Bos taurus | ENSBTAG00000039732 | 2 retrocopies |
retro_btau_1699, retro_btau_1747 ,
|
Monodelphis domestica | ENSMODG00000010026 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000025755 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030827 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027342 | 3 retrocopies |