RetrogeneDB ID: | retro_itri_1038 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393361.1:1322777..1323045(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000027350 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLOC1S5 | ||
Ensembl ID: | ENSSTOG00000027342 | ||
Aliases: | None | ||
Description: | biogenesis of lysosomal organelles complex-1, subunit 5, muted [Source:HGNC Symbol;Acc:18561] |
Percent Identity: | 73.91 % |
Parental protein coverage: | 73.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQDNLKEVLQRLQAANDSVCRLQQR-EQERRKMYHDHL-IATEKQHQLQWEDFMKEQPRRQAEVDEEHRR |
MQDNLKEVLQ.LQAA.D..CRLQQR....R.........I.T.KQHQLQWEDFMKEQP...AEVDEEH.R | |
Retrocopy | MQDNLKEVLQGLQAAHD--CRLQQREQERRKMYHDHLI>ITTGKQHQLQWEDFMKEQPYGHAEVDEEHSR |
Parental | AMERLKEQYAEMEKGLAKFSTF |
A.ERLKEQYAEMEKGLAKFSTF | |
Retrocopy | ATERLKEQYAEMEKGLAKFSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017324 | 1 retrocopy | |
Bos taurus | ENSBTAG00000039732 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000010026 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000025755 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030827 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027342 | 3 retrocopies |
retro_itri_1038 , retro_itri_179, retro_itri_1901,
|